当前解析结果
SmilChr02G002987| 统一新 Gene ID | SmilChr02G002987 |
|---|---|
| 名称 | SmilChr02G002987 |
| 描述 | WAT1-related protein At1g21890-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 50503328 - 50506990 / + |
| NCBI Gene ID | LOC131011999 |
|---|---|
| GeneID | 131011999 |
| locus_tag | - |
| NCBI Name | LOC131011999 |
| 原始查询 | SmilChr02G002987 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | WAT1-related protein At1g21890-like |
| 产物 | WAT1-related protein At1g21890-like |
| Arabidopsis | AT1G21890 (UMAMIT19)nodulin MtN21 /EamA-like transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:838791] identity=60; qcov=0.916; evalue=3.21e-147; confidence=high |
| Rice | Os10g0210500 (OsUMAMIT15)- identity=50.7; qcov=0.978; evalue=1.29e-132; confidence=high |
| GO | GO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity) |
| KEGG | - |
| Pfam | PF00892 (EamA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011999 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057795888.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057795888.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057795888.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057795888.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057795888.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:50504718 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A24,B108,B5,D8 |
Chr2:50506099 |
GGA |
G |
2bp_deletion | frameshift_variant | 1 | B28 |
Chr2:50506099 |
GGA |
G |
2bp_deletion | CDS_variant | 1 | B28 |
Chr2:50506210 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B127,B23 |
Chr2:50506249 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,C3 |
Chr2:50506471 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr2:50506548 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B93,C2 |
Chr2:50506728 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B48,B95,C5 |
Chr2:50506824 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795888.1PF00892
EamA 13-152 aa
PF00892
EamA 185-323 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795888.1 |
Pfam | PF00892 |
EamA | Domain | 13 | 152 | 9.8e-26 | 91.4 | EamA-like transporter family |
XP_057795888.1 |
Pfam | PF00892 |
EamA | Domain | 185 | 323 | 9.8e-26 | 91.4 | EamA-like transporter family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。