Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002989`

染色体: Chr02 坐标: 50553903-50558330 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002989`
名称	SmilChr02G002989
描述	uncharacterized SmilChr02G002989
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	50553903 - 50558330 / `-`

ID 对照

NCBI Gene ID	`LOC131012001`
GeneID	`131012001`
locus_tag	`-`
NCBI Name	`LOC131012001`
原始查询	`SmilChr02G002989`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ARM-repeat/Tetratricopeptide repeat (TPR)-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830884]; symbol=AT5G10200; hit=AT5G10200; species=arabidopsis; confidence=high
产物	ARM-repeat/Tetratricopeptide repeat (TPR)-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830884]; symbol=AT5G10200; hit=AT5G10200; species=arabidopsis; confidence=high
Arabidopsis	`AT5G10200` (AT5G10200) ARM-repeat/Tetratricopeptide repeat (TPR)-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830884] identity=77.9; qcov=1.02; evalue=0; confidence=high
Rice	`Os05g0421300` - identity=79.4; qcov=0.958; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF26524 (ARM_7)
InterPro	-
eggNOG	-
NR	GeneID:131012001

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057795890.1`
2	Cytoplasm	细胞质	0.60000	`XP_057795890.1`
3	Nucleus	细胞核	0.00000	`XP_057795890.1`
4	Chromosome	染色体	0.00000	`XP_057795890.1`
5	Centromere	着丝粒	0.00000	`XP_057795890.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:50555643`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr2:50556285`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B68,C22
`Chr2:50556311`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr2:50556322`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr2:50556822`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B109,B34,C20
`Chr2:50557171`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B47,B62,C3,C34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795890.1

624 aa

312

624

ARM_7

PF26524 ARM_7 7-244 aa

XP_057795892.1

624 aa

312

624

ARM_7

PF26524 ARM_7 7-244 aa

XP_057795893.1

624 aa

312

624

ARM_7

PF26524 ARM_7 7-244 aa

XP_057795894.1

624 aa

312

624

ARM_7

PF26524 ARM_7 7-244 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795890.1`	Pfam	`PF26524`	ARM_7	Repeat	7	244	7.8e-117	389.6	Plant ARM repeat
`XP_057795892.1`	Pfam	`PF26524`	ARM_7	Repeat	7	244	7.8e-117	389.6	Plant ARM repeat
`XP_057795893.1`	Pfam	`PF26524`	ARM_7	Repeat	7	244	7.8e-117	389.6	Plant ARM repeat
`XP_057795894.1`	Pfam	`PF26524`	ARM_7	Repeat	7	244	7.8e-117	389.6	Plant ARM repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057939907.1
TTTCACTGACTCTATTCACTCACACTCCCTGTCCCAACCAACAACACCCAAAAAAAGTTTCCACAAAGTAAGAATCAAATTTATCAGCTCGTAAACAAATTGCAATTTAGAAACCCAAAAGGAGGAATTTCCCACCTCCCCAGATCAACCACTCGCAAATTCTCAGGTGGTAGCTTCATGTGGACTTAGTTGCAAGTTCTGGGGAAAATAGTTAATCTTACGACGAGCATGGATAAACTAACCACCGACTGTCCATATCC...

XM_057939909.1
TCTATTCACTCACACTCCCTGTCCCAACCAACAACACCCAAAAAAAGTTTCCACAAAGTAAGAATCAAATTTATCAGCTCGTAAACAAATTGCAATTTAGAAACCCAAAAGGAGGAATTTCCCACCTCCCCAGATCAACCACTCGCAAATTCTCAGGATGCATATAGCTGTTTCCTAATGAAATTGATTATGATCCGTCGCTAGCCTGGTAAAGCAAACTGGATGAGGAGTGGAGTCAAGTTACATACTTGTGGTAGCTT...

CDS

4 records

下载 CDS FASTA

LOC131012001
ATGGATAAACTAACCACCGACTGTCCATATCCTGGGTGCTTCTTCTGTGTAATGAAGGAAGGGAACCCAAGCAAGCGCAGAGCAAGTGTACTAAAATTCTTCCGGGAACTTCCTTCACAGGATGATGATAGTCAAGTTCTTCCTATCAGTGGCCTTTGGAACACAGCAATGGCACATCCTAATGATCCTGAGTTTATTGAGCTCGGAATTTTCGAATGCATGACAGCACTCATCTGGAAGGGCTTAAAGAATCGCCGTTG...

Protein

4 records

下载 Protein FASTA

XP_057795890.1
MDKLTTDCPYPGCFFCVMKEGNPSKRRASVLKFFRELPSQDDDSQVLPISGLWNTAMAHPNDPEFIELGIFECMTALIWKGLKNRRWLSHDQNIYIPYYAAHIIGSYTMNMEEFAEMAVHAGVIPALVELLRGRLTWVEQRVAVRALGHLATYASTFPALASHGEILELSMQLAASSLEIVYTHFYQYVDRRLSYHCDLLTRGMGGVEMESRKAEEWASQLQCWSLQLINCFAFKHEFLPTICKPEFLVKLPGMWGGLVN...

XP_057795892.1
MDKLTTDCPYPGCFFCVMKEGNPSKRRASVLKFFRELPSQDDDSQVLPISGLWNTAMAHPNDPEFIELGIFECMTALIWKGLKNRRWLSHDQNIYIPYYAAHIIGSYTMNMEEFAEMAVHAGVIPALVELLRGRLTWVEQRVAVRALGHLATYASTFPALASHGEILELSMQLAASSLEIVYTHFYQYVDRRLSYHCDLLTRGMGGVEMESRKAEEWASQLQCWSLQLINCFAFKHEFLPTICKPEFLVKLPGMWGGLVN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器