Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003006`

染色体: Chr02 坐标: 50696801-50700421 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003006`
名称	SmilChr02G003006
描述	uncharacterized methyltransferase At1g78140, chloroplastic-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	50696801 - 50700421 / `+`

ID 对照

NCBI Gene ID	`LOC131011185`
GeneID	`131011185`
locus_tag	`-`
NCBI Name	`LOC131011185`
原始查询	`SmilChr02G003006`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844150]; symbol=AT1G78140; hit=AT1G78140; species=arabidopsis; confidence=high
产物	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844150]; symbol=AT1G78140; hit=AT1G78140; species=arabidopsis; confidence=high
Arabidopsis	`AT1G78140` (AT1G78140) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844150] identity=66.1; qcov=0.78; evalue=5.49e-140; confidence=high
Rice	`Os06g0646000` - identity=56.7; qcov=0.777; evalue=4.36e-111; confidence=high
GO	GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity)
KEGG	-
Pfam	PF01209 (Ubie_methyltran); PF08241 (Methyltransf_11); PF08242 (Methyltransf_12); PF13489 (Methyltransf_23); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:131011185

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057794966.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057794966.1`
3	Chloroplast membrane	叶绿体膜	0.20000	`XP_057794966.1`
4	Nucleus	细胞核	0.00000	`XP_057794966.1`
5	Chromosome	染色体	0.00000	`XP_057794966.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:50697147`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr2:50697195`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,B106,C60,C72,D10
`Chr2:50697217`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A20,B128,B137,B15
`Chr2:50698017`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B82
`Chr2:50698017`	`TG`	`T`	1bp_deletion	CDS_variant	1	B82
`Chr2:50699052`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr2:50699276`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr2:50699277`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A20,B132,B137,B15
`Chr2:50699308`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr2:50699795`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B123,B18,B21,C59
`Chr2:50699837`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,B128,B132,B137,B15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794966.1

363 aa

182

363

Methyltransf_23

Ubie_methyltran

Methyltransf_31

Methyltransf_25

Methyltransf_11

Methyltransf_12

PF13489 Methyltransf_23 184-344 aa PF01209 Ubie_methyltran 186-297 aa PF13847 Methyltransf_31 193-301 aa PF13649 Methyltransf_25 195-293 aa PF08241 Methyltransf_11 196-296 aa PF08242 Methyltransf_12 197-295 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794966.1`	Pfam	`PF13489`	Methyltransf_23	Domain	184	344	4.2e-09	37.0	Methyltransferase domain
`XP_057794966.1`	Pfam	`PF01209`	Ubie_methyltran	Family	186	297	4.7e-09	36.7	ubiE/COQ5 methyltransferase family
`XP_057794966.1`	Pfam	`PF13847`	Methyltransf_31	Domain	193	301	4.5e-12	46.7	Methyltransferase domain
`XP_057794966.1`	Pfam	`PF13649`	Methyltransf_25	Domain	195	293	1.8e-17	64.5	Methyltransferase domain
`XP_057794966.1`	Pfam	`PF08241`	Methyltransf_11	Domain	196	296	1.1e-21	78.0	Methyltransferase domain
`XP_057794966.1`	Pfam	`PF08242`	Methyltransf_12	Domain	197	295	1.6e-11	45.5	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938983.1
TGTTTAATCCAACGTTTCAGCCACAGTTTTTGTGCCTTCCGTAATATCTGCAGAATACCTAACGAAACAAACGACAAAAAGACACGCACACACAAACACCACTGTTCCAATCACTCAAATTTTGGGCGACCATTGAAACACGTCAGTCGCAATATTTTTGGCGCAATTGATGTGCATTTTTAATTTGTTACGAGTATACTACTATATATGTCAGTTATGTATACTAGTACTAGCAGAATTGTAACTGCCGGTTATTGGGA...

CDS

1 records

下载 CDS FASTA

LOC131011185
ATGGAGAAATTGATGGCGAGAGAGGCAGCGGGCGTCGATATACTGTCAGCATCAGCTTCATTGCTGCCGAGTCCACTCAATTTCAACCCGGTGCGATGCTGTTTTCATGTCGTCAAGTCGTCTCCTTTCATTCCCGCGAGAATTCGCGCCCGGCTTTTCACCTATAAAGTGCCAGCTTCTTCGGCTACAGCTGTTGAAACCAAGCCCGACCCTGTAATTGATGAATCCAGTTTGAAGATTCGCAAAGAAATTCTAGCTTG...

Protein

1 records

下载 Protein FASTA

XP_057794966.1
MEKLMAREAAGVDILSASASLLPSPLNFNPVRCCFHVVKSSPFIPARIRARLFTYKVPASSATAVETKPDPVIDESSLKIRKEILACPICYERVSWNGGADLSLEAVARSTLVCGCCRKSYTGKDSHLDLTVTGGNRVYGEPVVASTELFRFPLVSFLYERGWRQSFSVWGGFPGPEQEFELIKDYLQPVLGGNIVDASCGSGMFSRLFAKSGLFSLVVALDYSEAMLRQCYDFIKQEDNFPEEKLILVRADISRLPFAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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