当前解析结果
SmilChr02G003012| 统一新 Gene ID | SmilChr02G003012 |
|---|---|
| 名称 | SmilChr02G003012 |
| 描述 | uncharacterized SmilChr02G003012 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 50804113 - 50807451 / - |
| NCBI Gene ID | LOC131009684 |
|---|---|
| GeneID | 131009684 |
| locus_tag | - |
| NCBI Name | LOC131009684 |
| 原始查询 | SmilChr02G003012 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=low |
| 产物 | hit=Os08g0202300; species=rice; confidence=low |
| Arabidopsis | AT5G51080 (AT5G51080)RNase H family protein [Source:NCBI gene (formerly Entrezgene);Acc:835181] identity=33.3; qcov=0.086; evalue=2.02e-08; confidence=weak |
| Rice | Os08g0202300- identity=29.1; qcov=0.321; evalue=2.21e-34; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009684 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057793079.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057793079.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057793079.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793079.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793079.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:50804131 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,B33,B59,C45,C56 |
Chr2:50804157 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A22,B108,B35,C23,C48 |
Chr2:50804169 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B140,B53,C17,C28,C63 |
Chr2:50804170 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A3,C57 |
Chr2:50804180 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B137,B83,C10,C58 |
Chr2:50804228 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,B67 |
Chr2:50804233 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B67,B85 |
Chr2:50804233 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B67,B85 |
Chr2:50804244 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr2:50804252 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,C56 |
Chr2:50804263 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B124,C63 |
Chr2:50804284 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,B80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793079.1PF00078
RVT_1 146-287 aa
PF17919
RT_RNaseH_2 319-417 aa
PF17917
RT_RNaseH 347-446 aa
PF13456
RVT_3 482-600 aa
PF17921
Integrase_H2C2 690-738 aa
PF31073
DUF8803 946-1005 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793079.1 |
Pfam | PF00078 |
RVT_1 | Domain | 146 | 287 | 3e-25 | 90.0 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057793079.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 319 | 417 | 5.8e-18 | 65.5 | RNase H-like domain found in reverse transcriptase |
XP_057793079.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 347 | 446 | 5.9e-14 | 52.8 | RNase H-like domain found in reverse transcriptase |
XP_057793079.1 |
Pfam | PF13456 |
RVT_3 | Domain | 482 | 600 | 8.1e-16 | 58.8 | Reverse transcriptase-like |
XP_057793079.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 690 | 738 | 5e-12 | 46.5 | Integrase zinc binding domain |
XP_057793079.1 |
Pfam | PF31073 |
DUF8803 | Domain | 946 | 1005 | 3.4e-21 | 75.6 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。