Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003017`

染色体: Chr02 坐标: 50869401-50875690 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003017`
名称	SmilChr02G003017
描述	ABC transporter G family member 25-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	50869401 - 50875690 / `+`

ID 对照

NCBI Gene ID	`LOC131010039`
GeneID	`131010039`
locus_tag	`-`
NCBI Name	`LOC131010039`
原始查询	`SmilChr02G003017`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ABC transporter G family member 25-like
产物	ABC transporter G family member 25-like
Arabidopsis	`AT1G71960` (ABCG25) ATP-binding cassette family G25 [Source:NCBI gene (formerly Entrezgene);Acc:843527] identity=62.9; qcov=0.959; evalue=0; confidence=high
Rice	`Os11g0177400` (OsABCG27) - identity=59.6; qcov=0.711; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity)
KEGG	smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)); smil04981 (Folate transport and metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF12698 (ABC2_membrane_3); PF19055 (ABC2_membrane_7)
InterPro	-
eggNOG	-
NR	GeneID:131010039

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057793417.1`
2	Nucleus	细胞核	0.00000	`XP_057793417.1`
3	Chromosome	染色体	0.00000	`XP_057793417.1`
4	Centromere	着丝粒	0.00000	`XP_057793417.1`
5	Chromatin	染色质	0.00000	`XP_057793417.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:50870021`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C6,C64,C66
`Chr2:50870039`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B130,B54
`Chr2:50870066`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B134,C29,C6,C64,C66
`Chr2:50870075`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B89,C46,C50
`Chr2:50870154`	`A`	`ATC`	2bp_insertion	frameshift_variant	8	A14,B3,B41,B44,B58,B83,C37,D1
`Chr2:50870242`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B48,B73,C50
`Chr2:50870288`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C68,C85
`Chr2:50870291`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C2,C30,C69
`Chr2:50870293`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A20,C36
`Chr2:50870298`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A20,C36
`Chr2:50870311`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:50870314`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A16,B44,C44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793417.1

658 aa

329

658

ABC_tran

ABC2_membrane_7

ABC2_membrane

ABC2_membrane_3

ABC2_membrane_7

PF00005 ABC_tran 86-238 aa PF19055 ABC2_membrane_7 267-334 aa PF01061 ABC2_membrane 389-594 aa PF12698 ABC2_membrane_3 442-651 aa PF19055 ABC2_membrane_7 445-561 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793417.1`	Pfam	`PF00005`	ABC_tran	Domain	86	238	7.4e-30	105.1	ABC transporter
`XP_057793417.1`	Pfam	`PF19055`	ABC2_membrane_7	Family	267	334	7.4e-17	62.0	ABC-2 type transporter
`XP_057793417.1`	Pfam	`PF01061`	ABC2_membrane	Domain	389	594	7.9e-42	143.9	ABC-2 type transporter
`XP_057793417.1`	Pfam	`PF12698`	ABC2_membrane_3	Family	442	651	1.8e-11	44.5	ABC-2 family transporter protein
`XP_057793417.1`	Pfam	`PF19055`	ABC2_membrane_7	Family	445	561	7.4e-17	62.0	ABC-2 type transporter

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937434.1
TTCTCTCTCATCAATTTTCGTTTCTTGCTTCCTATTTCTCTCTCTCTCCCTCAACATCGCCACTACTTTTTTCACATAAATTTTTTTGTATCTTAAATTTTGCAACTGTACCATCCTTAATTTCGACGCAATTCTGAGAAATTTAGACAGAGAAAATACAATGTTGGTGTCTGGTGAAGCAGCAGAAGCCCCCCCTAGTAAAAATGGAGGAGCAAATTCCACACAAAATCAAAATAATTTGGATCGGAATTTGCAGTGTT...

CDS

1 records

下载 CDS FASTA

LOC131010039
ATGTTGGTGTCTGGTGAAGCAGCAGAAGCCCCCCCTAGTAAAAATGGAGGAGCAAATTCCACACAAAATCAAAATAATTTGGATCGGAATTTGCAGTGTTCTTTTCCCATCATGCTTAAGTTTGTGGATGTTTCATATAGAGTGAAGCTGCATGGCGGCGGCGGGAAATCAAGAACCGGCGGAATAATGAGCATGCTCGGCGGCGGAGGCGGCGATGTGGAGAATCCAGCGCCGCGCCACCAGGAGCGGACGATTTTGAA...

Protein

1 records

下载 Protein FASTA

XP_057793417.1
MLVSGEAAEAPPSKNGGANSTQNQNNLDRNLQCSFPIMLKFVDVSYRVKLHGGGGKSRTGGIMSMLGGGGGDVENPAPRHQERTILNGITGTAVPGRVLAIMGPSGSGKSTLLNALAGRFQGGQGLAGAILFNGRKFSKQIAKKTGFVAQDDVLYPHLTVRETLIFCSLLRLPGSVGRDEKIAAAEAAIAELGLGRCADTIIGNSFVRGVSGGERKRVSIAHEMLVDPSLLVLDEPTSGLDATAAYRLVAALGGLAARGK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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