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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003018

染色体: Chr02 坐标: 50876103-50883710 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003018
名称SmilChr02G003018
描述ATPase family AAA domain-containing protein At1g05910-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向50876103 - 50883710 / -

ID 对照

NCBI Gene IDLOC131010040
GeneID131010040
locus_tag-
NCBI NameLOC131010040
原始查询SmilChr02G003018

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ATPase family AAA domain-containing protein At1g05910-like
产物ATPase family AAA domain-containing protein At1g05910-like
ArabidopsisAT1G05910 (AT1G05910)
cell division cycle protein 48-related / CDC48-like protein [Source:NCBI gene (formerly Entrezgene);Acc:837101]
identity=66.8; qcov=1.01; evalue=0; confidence=high
RiceOs09g0515100
-
identity=63.1; qcov=1.02; evalue=0; confidence=high
GOGO:0003682 (chromatin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0016887 (ATP hydrolysis activity); GO:0042393 (histone binding); GO:0045944 (positive regulation of transcription by RNA polymerase II)
KEGG-
PfamPF00004 (AAA); PF00439 (Bromodomain); PF01695 (IstB_IS21); PF07728 (AAA_5); PF17862 (AAA_lid_3)
InterPro-
eggNOG-
NRGeneID:131010040

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057793418.1
2 Chromosome 染色体 0.60000 XP_057793418.1
3 Nucleoplasm 核质 0.60000 XP_057793420.1
4 Centromere 着丝粒 0.00000 XP_057793418.1
5 Chromatin 染色质 0.00000 XP_057793418.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:50876333 G A EMS_canonical_SNV CDS_variant 1 C81
Chr2:50876391 G A EMS_canonical_SNV CDS_variant 2 C85,D10
Chr2:50876457 C T EMS_canonical_SNV CDS_variant 1 D11
Chr2:50876460 C T EMS_canonical_SNV CDS_variant 1 D10
Chr2:50876668 G A EMS_canonical_SNV CDS_variant 1 B65
Chr2:50876758 C T EMS_canonical_SNV CDS_variant 4 A3,C31,C48,C52
Chr2:50877485 G A EMS_canonical_SNV CDS_variant 2 B129,B91
Chr2:50877934 G A EMS_canonical_SNV CDS_variant 1 B80
Chr2:50880112 C T EMS_canonical_SNV CDS_variant 2 A4,B83
Chr2:50881132 C T EMS_canonical_SNV CDS_variant 4 B10,B72,B94,C74
Chr2:50881260 C T EMS_canonical_SNV CDS_variant 3 A3,B60,C1
Chr2:50881282 C T EMS_canonical_SNV CDS_variant 1 B80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793418.1
1186 aa
N
1
593
1186
IstB_IS21
AAA_5
AAA
AAA_lid_3
Bromodomain
C
PF01695 IstB_IS21 406-489 aa PF07728 AAA_5 406-491 aa PF00004 AAA 407-542 aa PF17862 AAA_lid_3 570-606 aa PF00439 Bromodomain 894-964 aa
XP_057793419.1
1186 aa
N
1
593
1186
IstB_IS21
AAA_5
AAA
AAA_lid_3
Bromodomain
C
PF01695 IstB_IS21 406-489 aa PF07728 AAA_5 406-491 aa PF00004 AAA 407-542 aa PF17862 AAA_lid_3 570-606 aa PF00439 Bromodomain 894-964 aa
XP_057793420.1
1125 aa
N
1
562
1125
IstB_IS21
AAA_5
AAA
AAA_lid_3
Bromodomain
C
PF01695 IstB_IS21 345-428 aa PF07728 AAA_5 345-430 aa PF00004 AAA 346-481 aa PF17862 AAA_lid_3 509-545 aa PF00439 Bromodomain 833-903 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057793418.1 Pfam PF01695 IstB_IS21 Domain 406 489 1.9e-07 31.6 IstB-like ATP binding protein
XP_057793418.1 Pfam PF07728 AAA_5 Domain 406 491 3e-05 24.8 AAA domain (dynein-related subfamily)
XP_057793418.1 Pfam PF00004 AAA Domain 407 542 2.5e-44 151.6 ATPase family associated with various cellular activities (AAA)
XP_057793418.1 Pfam PF17862 AAA_lid_3 Domain 570 606 5.6e-11 42.5 AAA+ lid domain
XP_057793418.1 Pfam PF00439 Bromodomain Domain 894 964 4.4e-15 56.1 Bromodomain
XP_057793419.1 Pfam PF01695 IstB_IS21 Domain 406 489 1.9e-07 31.6 IstB-like ATP binding protein
XP_057793419.1 Pfam PF07728 AAA_5 Domain 406 491 3e-05 24.8 AAA domain (dynein-related subfamily)
XP_057793419.1 Pfam PF00004 AAA Domain 407 542 2.5e-44 151.6 ATPase family associated with various cellular activities (AAA)
XP_057793419.1 Pfam PF17862 AAA_lid_3 Domain 570 606 5.6e-11 42.5 AAA+ lid domain
XP_057793419.1 Pfam PF00439 Bromodomain Domain 894 964 4.4e-15 56.1 Bromodomain
XP_057793420.1 Pfam PF01695 IstB_IS21 Domain 345 428 2.2e-07 31.4 IstB-like ATP binding protein
XP_057793420.1 Pfam PF07728 AAA_5 Domain 345 430 3.3e-05 24.6 AAA domain (dynein-related subfamily)
XP_057793420.1 Pfam PF00004 AAA Domain 346 481 2.3e-44 151.7 ATPase family associated with various cellular activities (AAA)
XP_057793420.1 Pfam PF17862 AAA_lid_3 Domain 509 545 5.1e-11 42.6 AAA+ lid domain
XP_057793420.1 Pfam PF00439 Bromodomain Domain 833 903 4.2e-15 56.2 Bromodomain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057937435.1
TGTGAAACGAAAAATCTCTCCTCTCTCTCTGCGTATCGCGAGCAACCCCTGCAGTTTTTTTCACCTGACTTTTCCGTTCTTAGTATTTGTTGAATATCATCTGAAGTTTAGGATATCGGGCGACTGGATTTTTTTTGACTGGATGCTTGTGTGCGTGTCGATTAAGGAGAGAGAAGCCCTTGGTGTGGTGGAAGATTGGGGCTGAATACTAGTTTTTTTGATGGGAAGACTCTAGTCGTTCCGATGTTCTCAAAAGGATC...
XM_057937436.1
AAAATCTCTCCTCTCTCTCTGCGTATCGCGAGCAACCCCTGCAGTTTTTTTCACCTGACTTTTCCGTTCTTAGTATTTGTTGAATATCATCTGAAGCTGCTGCCTGTTATTTTCTCTAATTTCGTGGCGTACGGAATGCATGCAATTGCATTTGGAGCTATCATCTTGTTCTAAACATTTAGGATATCGGGCGACTGGATTTTTTTTGACTGGATGCTTGTGTGCGTGTCGATTAAGGAGAGAGAAGCCCTTGGTGTGGT...

CDS

3 records

下载 CDS FASTA
LOC131010040
ATGTTCTCAAAAGGATCAGTTGTGGTGGATGGGCCTGATTCAAGGCCAGTTCGTACAAGTGATAGGCTCAAGAGTAGGACAAGGCATCATAATCGCCGCATGTATTATACTCCAAATATTGTTATGCGGAGTCAGAAAAAGAAGCCTAAAAAACGGGCTTCATCTTCACATTTGGCGAAGATTTTTCAAAAGGAAAGAACGTCATCTAAAGCAAATTCAGTGGATGCCAATCTTAGGCGGTCTACCAGGAAGAGGAGGAT...
LOC131010040
ATGTTCTCAAAAGGATCAGTTGTGGTGGATGGGCCTGATTCAAGGCCAGTTCGTACAAGTGATAGGCTCAAGAGTAGGACAAGGCATCATAATCGCCGCATGTATTATACTCCAAATATTGTTATGCGGAGTCAGAAAAAGAAGCCTAAAAAACGGGCTTCATCTTCACATTTGGCGAAGATTTTTCAAAAGGAAAGAACGTCATCTAAAGCAAATTCAGTGGATGCCAATCTTAGGCGGTCTACCAGGAAGAGGAGGAT...

Protein

3 records

下载 Protein FASTA
XP_057793418.1
MFSKGSVVVDGPDSRPVRTSDRLKSRTRHHNRRMYYTPNIVMRSQKKKPKKRASSSHLAKIFQKERTSSKANSVDANLRRSTRKRRMPMNLEEYTDSSGTEGEDNDLMMPRYQRSRNRINNNIASQDELTPRREGLRPRREGLRPRRSRVGSRKALRIESEEEQSTSDEKGTNVEPENAKDMEDNDADDGEGEEEGAGEEDGEDEEEDGDDEEGEEQEGRRRYDLRNRADVRRLSIEQSKQMPRSPRRVLHQGMGSKVGR...
XP_057793419.1
MFSKGSVVVDGPDSRPVRTSDRLKSRTRHHNRRMYYTPNIVMRSQKKKPKKRASSSHLAKIFQKERTSSKANSVDANLRRSTRKRRMPMNLEEYTDSSGTEGEDNDLMMPRYQRSRNRINNNIASQDELTPRREGLRPRREGLRPRRSRVGSRKALRIESEEEQSTSDEKGTNVEPENAKDMEDNDADDGEGEEEGAGEEDGEDEEEDGDDEEGEEQEGRRRYDLRNRADVRRLSIEQSKQMPRSPRRVLHQGMGSKVGR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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