当前解析结果
SmilChr02G003028| 统一新 Gene ID | SmilChr02G003028 |
|---|---|
| 名称 | SmilChr02G003028 |
| 描述 | uncharacterized SmilChr02G003028 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 50995293 - 50996129 / + |
| NCBI Gene ID | LOC131010049 |
|---|---|
| GeneID | 131010049 |
| locus_tag | - |
| NCBI Name | LOC131010049 |
| 原始查询 | SmilChr02G003028 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine protease inhibitor, Kazal-type family protein [Source:NCBI gene (formerly Entrezgene);Acc:828124]; symbol=AT4G01575; hit=AT4G01575; species=arabidopsis; confidence=medium |
| 产物 | serine protease inhibitor, Kazal-type family protein [Source:NCBI gene (formerly Entrezgene);Acc:828124]; symbol=AT4G01575; hit=AT4G01575; species=arabidopsis; confidence=medium |
| Arabidopsis | AT4G01575 (AT4G01575)serine protease inhibitor, Kazal-type family protein [Source:NCBI gene (formerly Entrezgene);Acc:828124] identity=49.2; qcov=1.03; evalue=4.35e-35; confidence=medium |
| Rice | Os10g0140900- identity=63.4; qcov=0.325; evalue=9.14e-11; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010049 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057793428.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057793428.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793428.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793428.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793428.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:50995494 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B29 |
Chr2:50995499 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr2:50995517 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,A14,B121,B22,B28 |
Chr2:50995559 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B123,B134,B33 |
Chr2:50995576 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B126,B17,B52,C62 |
Chr2:50995675 |
CGG |
C |
2bp_deletion | frameshift_variant | 4 | B2,B36,B83,C57 |
Chr2:50995675 |
CGG |
C |
2bp_deletion | CDS_variant | 4 | B2,B36,B83,C57 |
Chr2:50995679 |
A |
ATG |
2bp_insertion | frameshift_variant | 4 | B2,B36,B83,C57 |
Chr2:50995679 |
A |
ATG |
2bp_insertion | CDS_variant | 4 | B2,B36,B83,C57 |
Chr2:50995769 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | B136,B46,B71,B98,D2 |
Chr2:50995769 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B136,B46,B71,B98,D2 |
Chr2:50995781 |
C |
CG |
1bp_insertion | frameshift_variant | 3 | A20,B22,C19 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。