Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003054`

染色体: Chr02 坐标: 51317427-51322753 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003054`
名称	SmilChr02G003054
描述	uncharacterized SmilChr02G003054
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	51317427 - 51322753 / `+`

ID 对照

NCBI Gene ID	`LOC131010071`
GeneID	`131010071`
locus_tag	`-`
NCBI Name	`LOC131010071`
原始查询	`SmilChr02G003054`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	5'-3' exonuclease family protein [Source:NCBI gene (formerly Entrezgene);Acc:840340]; symbol=AT1G34380; hit=AT1G34380; species=arabidopsis; confidence=medium
产物	5'-3' exonuclease family protein [Source:NCBI gene (formerly Entrezgene);Acc:840340]; symbol=AT1G34380; hit=AT1G34380; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G34380` (AT1G34380) 5'-3' exonuclease family protein [Source:NCBI gene (formerly Entrezgene);Acc:840340] identity=67.2; qcov=0.45; evalue=2.09e-138; confidence=medium
Rice	`Os01g0874800` (P0698A10.12-1) - identity=64.8; qcov=0.472; evalue=1.23e-136; confidence=medium
GO	GO:0003677 (DNA binding); GO:0005515 (protein binding); GO:0017108 (5'-flap endonuclease activity); GO:0033567 (DNA replication, Okazaki fragment processing)
KEGG	-
Pfam	PF00515 (TPR_1); PF01367 (5_3_exonuc); PF02739 (5_3_exonuc_N); PF07719 (TPR_2); PF13181 (TPR_8); PF13432 (TPR_16); PF14559 (TPR_19)
InterPro	-
eggNOG	-
NR	GeneID:131010071

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057793445.1`
2	Chloroplast membrane	叶绿体膜	0.40000	`XP_057793445.1`
3	Chloroplast stroma	叶绿体基质	0.40000	`XP_057793445.1`
4	Chloroplast thylakoid	类囊体	0.20000	`XP_057793445.1`
5	Nucleus	细胞核	0.00000	`XP_057793445.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:51317717`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B72,B94,C74
`Chr2:51317770`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr2:51319645`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:51319888`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B30,B45,C26
`Chr2:51320023`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D5
`Chr2:51322027`	`CTG`	`C`	2bp_deletion	frameshift_variant	1	B27
`Chr2:51322027`	`CTG`	`C`	2bp_deletion	CDS_variant	1	B27
`Chr2:51322058`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A16,C30
`Chr2:51322446`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B30,B45,C26

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793445.1

631 aa

316

631

5_3_exonuc_N

5_3_exonuc

TPR_8

TPR_16

TPR_19

TPR_2

TPR_8

TPR_1

PF02739 5_3_exonuc_N 115-243 aa PF01367 5_3_exonuc 269-360 aa PF13181 TPR_8 534-566 aa PF13432 TPR_16 539-597 aa PF14559 TPR_19 545-602 aa PF07719 TPR_2 569-601 aa PF13181 TPR_8 569-601 aa PF00515 TPR_1 570-601 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793445.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	115	243	6e-21	75.6	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057793445.1`	Pfam	`PF01367`	5_3_exonuc	Domain	269	360	6e-13	49.8	5'-3' exonuclease, C-terminal SAM fold
`XP_057793445.1`	Pfam	`PF13181`	TPR_8	Repeat	534	566	6.2e-12	45.4	Tetratricopeptide repeat
`XP_057793445.1`	Pfam	`PF13432`	TPR_16	Repeat	539	597	4.2e-08	34.2	Tetratricopeptide repeat
`XP_057793445.1`	Pfam	`PF14559`	TPR_19	Repeat	545	602	1.8e-06	28.9	Tetratricopeptide repeat
`XP_057793445.1`	Pfam	`PF07719`	TPR_2	Repeat	569	601	1.9e-15	56.3	Tetratricopeptide repeat
`XP_057793445.1`	Pfam	`PF13181`	TPR_8	Repeat	569	601	6.2e-12	45.4	Tetratricopeptide repeat
`XP_057793445.1`	Pfam	`PF00515`	TPR_1	Repeat	570	601	3.1e-13	49.6	Tetratricopeptide repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937462.1
CCAGATGAAAACCGAAGAGATAACGCGCGCAGCAAAAATCTTGAACAACACCGGAATTTCTCGGAGCAGCCCATCTCATGTTGACATGTTCTATGGATTGTCATCTGCAAATCCGTAAAACTTCCCAATTAATTTCTTCTTGCGACATTCTAAACCCCTCCAGAATTTATCATCTGCCGTTCTTAATTCCTGTTCCGAATTCTAGAACGAAAAAGGCCGAATCTTGGAAGTTATCATCCACGAATGGCGAGCAATCGGCT...

CDS

1 records

下载 CDS FASTA

LOC131010071
ATGTTGACATGTTCTATGGATTGTCATCTGCAAATCCGTAAAACTTCCCAATTAATTTCTTCTTGCGACATTCTAAACCCCTCCAGAATTTATCATCTGCCGTTCTTAATTCCTGTTCCGAATTCTAGAACGAAAAAGGCCGAATCTTGGAAGTTATCATCCACGAATGGCGAGCAATCGGCTGTTCACGATGAAGCCCATTTGCCCCAACTGCGCAAGAATGGTGCTTTGAGTTTAGATGGTGGTAGTAGTGGCTACCA...

Protein

1 records

下载 Protein FASTA

XP_057793445.1
MLTCSMDCHLQIRKTSQLISSCDILNPSRIYHLPFLIPVPNSRTKKAESWKLSSTNGEQSAVHDEAHLPQLRKNGALSLDGGSSGYHKMARKRRVFFLDVNPLCYRGSTPSLDSFAHWISLFFSQVSLNDPVVAVLDGEGGNEHRRQLLPSYKANRKKMLQQFPAAEMSTWASVGRSKKLVMDVLQKCNVPVVKIKGHEADDVVTTLVHQVLHKGYQAVIASPDKDFKQLISEDVQMVMPIQELDRWSFYTLKHYVAQYN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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