Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003056

染色体: Chr02 坐标: 51335241-51338950 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003056
名称SmilChr02G003056
描述FHA domain-containing protein PS1-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向51335241 - 51338950 / -

ID 对照

NCBI Gene IDLOC131010073
GeneID131010073
locus_tag-
NCBI NameLOC131010073
原始查询SmilChr02G003056

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述FHA domain-containing protein PS1-like
产物FHA domain-containing protein PS1-like
ArabidopsisAT1G34355 (PS1)
forkhead-associated (FHA) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:840337]
identity=39.5; qcov=0.602; evalue=6.58e-78; confidence=medium
RiceOs11g0171700
-
identity=38.9; qcov=0.492; evalue=6.56e-70; confidence=medium
GOGO:0005515 (protein binding); GO:0031965 (nuclear membrane)
KEGG-
PfamPF00498 (FHA); PF13638 (PIN_4)
InterPro-
eggNOG-
NRGeneID:131010073

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057793446.1
2 Chromosome 染色体 0.00000 XP_057793446.1
3 Centromere 着丝粒 0.00000 XP_057793446.1
4 Chromatin 染色质 0.00000 XP_057793446.1
5 Telomere 端粒 0.00000 XP_057793446.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:51335529 G A EMS_canonical_SNV CDS_variant 1 D10
Chr2:51335575 C T EMS_canonical_SNV CDS_variant 1 C86
Chr2:51335697 G A EMS_canonical_SNV CDS_variant 2 B73,B89
Chr2:51335942 C T EMS_canonical_SNV CDS_variant 2 B53,C17
Chr2:51336194 C T EMS_canonical_SNV CDS_variant 3 C33,C47,C51
Chr2:51336696 G A EMS_canonical_SNV CDS_variant 3 B11,B56,B96
Chr2:51336779 G A EMS_canonical_SNV CDS_variant 1 B61
Chr2:51336967 C T EMS_canonical_SNV CDS_variant 1 B35
Chr2:51337046 C T EMS_canonical_SNV CDS_variant 1 B35
Chr2:51337305 TG T 1bp_deletion frameshift_variant 1 D1
Chr2:51337305 TG T 1bp_deletion CDS_variant 1 D1
Chr2:51337355 C T EMS_canonical_SNV CDS_variant 1 B35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057793446.1
815 aa
N
1
408
815
FHA
PIN_4
C
PF00498 FHA 59-126 aa PF13638 PIN_4 578-743 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057793446.1 Pfam PF00498 FHA Family 59 126 1.1e-16 61.7 FHA domain
XP_057793446.1 Pfam PF13638 PIN_4 Domain 578 743 5.2e-18 66.3 PIN domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057937463.1
CGTAGTCAATTTATTTCCATGGTTGGTTTGAGCAAATGACTAAATGAGCCGTTTCACATCGAGCAAAAGCCATCATAATTTCCAACGGTAACCATTTTCAAAAAGATTCAATTCAAACTCCCAACTATATTTCTCCTTCCCTTTCCACTCCAAGAAACCCCAAAATCAAGGAACCCATTTTCTTCACGATAAGCTTCATCCTCTCACTACAATGGCGGAGAATCAAGAACAAGTGAGGCCAAAGGAGAGAGAAATCCCAG...

CDS

1 records

下载 CDS FASTA
LOC131010073
ATGGCGGAGAATCAAGAACAAGTGAGGCCAAAGGAGAGAGAAATCCCAGTTTTCACAGTCTTGAAGAATAATTGTATATTGAAGAACATCTTTGTTCTAGACAACCCTCCTCCGATTTCTTCGTCTTCCTCGGCCGAAATTTCTGGTCAGGAATCGGAAAGGGAAGAGATATTGCTGGTGGGGAGGCACCCCGATTGTAATATAAAGCTGGAGCACCCGAGTATCAGCAGATTTCATCTCCGCATTCACTCTATGCCCTC...

Protein

1 records

下载 Protein FASTA
XP_057793446.1
MAENQEQVRPKEREIPVFTVLKNNCILKNIFVLDNPPPISSSSSAEISGQESEREEILLVGRHPDCNIKLEHPSISRFHLRIHSMPSSRSLFVTDLSSVHGTCISGKRIEPGVTMELVPGDTLKLGESSRLYRLDWVPISFAYDINDPFVPQPDTLDTVDEETEGADQDENRLSRENEWGWDLSDEIEALGWQETTAEVENTRLPEMLSNENEITGSQLLLLDVSLSADEETEGATEQVKMLSNENEITGSQLLSLDVSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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