当前解析结果
SmilChr02G003074| 统一新 Gene ID | SmilChr02G003074 |
|---|---|
| 名称 | SmilChr02G003074 |
| 描述 | protein ALP1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 51643140 - 51644435 / + |
| NCBI Gene ID | LOC131009697 |
|---|---|
| GeneID | 131009697 |
| locus_tag | - |
| NCBI Name | LOC131009697 |
| 原始查询 | SmilChr02G003074 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein ALP1-like |
| 产物 | protein ALP1-like |
| Arabidopsis | AT2G13770 (AT2G13770)nuclease [Source:NCBI gene (formerly Entrezgene);Acc:815861] identity=54.5; qcov=0.26; evalue=4.14e-35; confidence=weak |
| Rice | Os06g0597250- identity=52.1; qcov=0.993; evalue=6.3e-149; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF04827 (Plant_tran); PF13359 (DDE_Tnp_4); PF28509 (DUF8418) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009697 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793092.1 |
| 2 | Chromosome | 染色体 | 0.40000 | XP_057793092.1 |
| 3 | Telomere | 端粒 | 0.20000 | XP_057793092.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793092.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793092.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:51643151 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,C71 |
Chr2:51643164 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B71,C53,C78,D2 |
Chr2:51643173 |
C |
T |
EMS_canonical_SNV | stop_gained | 41 | A19,B109,B11,B110,B114,B120,B121,B122,B123,B127,B130,B138,B140,B2,B23,B26,B34,B41,B42,B48,B55,B58,B6,B60,B77,B82,B89,C11,C29,C3,C49,C5,C52,C54,C63,C67,C71,C80,C85,D3,D6 |
Chr2:51643174 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B126,B80 |
Chr2:51643177 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B121,B22,B30,B40,C16 |
Chr2:51643224 |
C |
CA |
1bp_insertion | frameshift_variant | 98 | A10,A11,A13,A15,A16,A21,A24,A4,A8,B100,B103,B106,B110,B111,B118,B120,B121,B123,B124,B127,B13,B130,B131,B132,B133,B134,B136,B14,B15,B16,B18,B19,B24,B25,B27,B29,B3,B30,B35,B36,B37,B39,B4,B44,B45,B5,B50,B51,B52,B58,B59,B62,B63,B70,B72,B74,B84,B90,B92,B95,B98,C1,C12,C16,C17,C19,C20,C21,C26,C28,C31,C35,C36,C40,C41,C46,C47,C48,C51,C53,C54,C57,C59,C60,C61,C68,C70,C72,C73,C74,C76,C79,C85,C86,C87,D3,D8,D9 |
Chr2:51643242 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B117,B90,D11 |
Chr2:51643263 |
C |
T |
EMS_canonical_SNV | stop_gained | 16 | A14,B101,B23,B3,B46,B48,B56,B89,C32,C4,C46,C59,C61,C8,C80,D10 |
Chr2:51643266 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | A1,B78,B90,C37 |
Chr2:51643266 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A1,B78,B90,C37 |
Chr2:51643283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:51643298 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B90 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793092.1PF28509
DUF8418 58-96 aa
PF04827
Plant_tran 165-368 aa
PF13359
DDE_Tnp_4 196-359 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793092.1 |
Pfam | PF28509 |
DUF8418 | Domain | 58 | 96 | 1.8e-20 | 73.1 | Domain of unknown function (DUF8418) |
XP_057793092.1 |
Pfam | PF04827 |
Plant_tran | Family | 165 | 368 | 1.4e-94 | 316.2 | Plant transposon protein |
XP_057793092.1 |
Pfam | PF13359 |
DDE_Tnp_4 | Domain | 196 | 359 | 1.1e-08 | 35.6 | DDE superfamily endonuclease |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。