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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003078

染色体: Chr02 坐标: 51712888-51716962 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003078
名称SmilChr02G003078
描述probable magnesium transporter NIPA6
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向51712888 - 51716962 / +

ID 对照

NCBI Gene IDLOC131010094
GeneID131010094
locus_tag-
NCBI NameLOC131010094
原始查询SmilChr02G003078

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable magnesium transporter NIPA6
产物probable magnesium transporter NIPA6
ArabidopsisAT2G21120 (AT2G21120)
magnesium transporter, putative (DUF803) [Source:NCBI gene (formerly Entrezgene);Acc:816647]
identity=68.1; qcov=0.959; evalue=2.49e-115; confidence=high
RiceOs05g0430700
-
identity=73.7; qcov=0.959; evalue=1.6e-122; confidence=high
GOGO:0015095 (magnesium ion transmembrane transporter activity); GO:0015693 (magnesium ion transport); GO:0016020 (membrane)
KEGG-
PfamPF00892 (EamA); PF05653 (Mg_trans_NIPA)
InterPro-
eggNOG-
NRGeneID:131010094

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Vacuole 液泡 1.00000 XP_057793469.1
2 Vacuole membrane 液泡膜 1.00000 XP_057793470.1
3 Cell membrane 细胞膜 0.80000 XP_057793474.1
4 Golgi apparatus 高尔基体 0.40000 XP_057793476.1
5 Nucleus 细胞核 0.00000 XP_057793469.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:51714288 G A EMS_canonical_SNV CDS_variant 1 B40
Chr2:51714318 C T EMS_canonical_SNV CDS_variant 4 B10,B72,B94,C74
Chr2:51715649 AC A 1bp_deletion frameshift_variant 1 B96
Chr2:51715649 AC A 1bp_deletion CDS_variant 1 B96
Chr2:51716345 C T EMS_canonical_SNV CDS_variant 4 B32,B59,B6,C63
Chr2:51716496 G GA 1bp_insertion frameshift_variant 9 A11,B125,B47,B74,B87,B91,C46,C50,C65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793469.1
388 aa
N
1
194
388
Mg_trans_NIPA
EamA
C
PF05653 Mg_trans_NIPA 5-295 aa PF00892 EamA 55-121 aa
XP_057793470.1
346 aa
N
1
173
346
Mg_trans_NIPA
EamA
C
PF05653 Mg_trans_NIPA 5-295 aa PF00892 EamA 55-121 aa
XP_057793471.1
343 aa
N
1
172
343
Mg_trans_NIPA
EamA
C
PF05653 Mg_trans_NIPA 5-295 aa PF00892 EamA 55-121 aa
XP_057793472.1
332 aa
N
1
166
332
Mg_trans_NIPA
EamA
C
PF05653 Mg_trans_NIPA 1-239 aa PF00892 EamA 2-65 aa
XP_057793473.1
332 aa
N
1
166
332
Mg_trans_NIPA
EamA
C
PF05653 Mg_trans_NIPA 1-239 aa PF00892 EamA 2-65 aa
XP_057793474.1
290 aa
N
1
145
290
Mg_trans_NIPA
EamA
C
PF05653 Mg_trans_NIPA 1-239 aa PF00892 EamA 2-65 aa
XP_057793475.1
287 aa
N
1
144
287
Mg_trans_NIPA
EamA
C
PF05653 Mg_trans_NIPA 1-239 aa PF00892 EamA 2-65 aa
XP_057793476.1
242 aa
N
1
121
242
Mg_trans_NIPA
EamA
C
PF05653 Mg_trans_NIPA 5-232 aa PF00892 EamA 55-121 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057793469.1 Pfam PF05653 Mg_trans_NIPA Family 5 295 3.2e-129 431.0 Magnesium transporter NIPA
XP_057793469.1 Pfam PF00892 EamA Domain 55 121 9.6e-08 33.1 EamA-like transporter family
XP_057793470.1 Pfam PF05653 Mg_trans_NIPA Family 5 295 2.4e-129 431.4 Magnesium transporter NIPA
XP_057793470.1 Pfam PF00892 EamA Domain 55 121 8e-08 33.4 EamA-like transporter family
XP_057793471.1 Pfam PF05653 Mg_trans_NIPA Family 5 295 2.4e-129 431.4 Magnesium transporter NIPA
XP_057793471.1 Pfam PF00892 EamA Domain 55 121 7.9e-08 33.4 EamA-like transporter family
XP_057793472.1 Pfam PF05653 Mg_trans_NIPA Family 1 239 4.2e-103 345.3 Magnesium transporter NIPA
XP_057793472.1 Pfam PF00892 EamA Domain 2 65 1.1e-06 29.7 EamA-like transporter family
XP_057793473.1 Pfam PF05653 Mg_trans_NIPA Family 1 239 4.2e-103 345.3 Magnesium transporter NIPA
XP_057793473.1 Pfam PF00892 EamA Domain 2 65 1.1e-06 29.7 EamA-like transporter family
XP_057793474.1 Pfam PF05653 Mg_trans_NIPA Family 1 239 3.1e-103 345.7 Magnesium transporter NIPA
XP_057793474.1 Pfam PF00892 EamA Domain 2 65 8.5e-07 30.0 EamA-like transporter family
XP_057793475.1 Pfam PF05653 Mg_trans_NIPA Family 1 239 3.1e-103 345.7 Magnesium transporter NIPA
XP_057793475.1 Pfam PF00892 EamA Domain 2 65 8.4e-07 30.1 EamA-like transporter family
XP_057793476.1 Pfam PF05653 Mg_trans_NIPA Family 5 232 2.7e-100 336.1 Magnesium transporter NIPA
XP_057793476.1 Pfam PF00892 EamA Domain 55 121 4.3e-08 34.2 EamA-like transporter family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA
XR_009096477.1
GCACTTGGACTGGCAGCTCAAGCACAAGCTGACAATACACACACACACACACACACACACACACACACACACACATAATACGCGCACACATACACACACATAATACGCGCACGAAATCTTGCCACAGCAACAATATAGATTTCTCCAAAAAAAGCTCATCAAGTAGCTGTTTTTATTTCTTGATCCCTTTCATCTCGCGGAAAATCCGAATAAATTGGACAACAGATGAGAAATACGCTCGCGGGAGCACCGATTGAGAG...
XM_057937486.1
AATTAACCATGCAATTAACCTATAAAAAAACATCCCTTTCAACCAACATCTGCCCTGCACTTGGACTGGCAGCTCAAGCACAAGCTGACAATACACACACACACACACACACACACACACACACACACACATAATACGCGCACACATACACACACATAATACGCGCACGAAATCTTGCCACAGCAACAATATAGATTTCTCCAAAAAAAGCTCATCAAGTAGCTGTTTTTATTTCTTGATCCCTTTCATCTCGCGGAAAA...

CDS

8 records

下载 CDS FASTA
LOC131010094
ATGTTTGAGACCAACTTAATCGGGCTCGGGCTGGCCGTGGGCTCCAGCGCGTTTATTGGGTCGAGCTTTATCATCAAGAAGAAGGGTTTGCAGAGAGCCGGAGCATCCGGCTCTCGCGCCAGTTCGGGAGGATATGGATATCTGCAAGAACCACTCTGGTGGATTGGCATGTTCACTATGGTTATTGGAGAATTTGCCAATTTTGTAGCTTACATGTATGCTCCTGCTGTTCTCGTCACCCCACTTGGAGCATTAAGTAT...
LOC131010094
ATGTTTGAGACCAACTTAATCGGGCTCGGGCTGGCCGTGGGCTCCAGCGCGTTTATTGGGTCGAGCTTTATCATCAAGAAGAAGGGTTTGCAGAGAGCCGGAGCATCCGGCTCTCGCGCCAGTTCGGGAGGATATGGATATCTGCAAGAACCACTCTGGTGGATTGGCATGTTCACTATGGTTATTGGAGAATTTGCCAATTTTGTAGCTTACATGTATGCTCCTGCTGTTCTCGTCACCCCACTTGGAGCATTAAGTAT...

Protein

8 records

下载 Protein FASTA
XP_057793469.1
MFETNLIGLGLAVGSSAFIGSSFIIKKKGLQRAGASGSRASSGGYGYLQEPLWWIGMFTMVIGEFANFVAYMYAPAVLVTPLGALSIIVSAILAHFLLREKLRKLGILGCVLCIVGSTIIVLHAPGEHNISSVDQIWDLATQPAFLLYIASAVAVVLVLVLYCEPRYGQTNIMVYIGVCSIIGSVTVMSIKAVGIAIKLTLEGYSQVAHFQSWIFAMVSASCIITQLIYLNKALDTFNTAVVSPIYYAMFTSLTIFVSAI...
XP_057793470.1
MFETNLIGLGLAVGSSAFIGSSFIIKKKGLQRAGASGSRASSGGYGYLQEPLWWIGMFTMVIGEFANFVAYMYAPAVLVTPLGALSIIVSAILAHFLLREKLRKLGILGCVLCIVGSTIIVLHAPGEHNISSVDQIWDLATQPAFLLYIASAVAVVLVLVLYCEPRYGQTNIMVYIGVCSIIGSVTVMSIKAVGIAIKLTLEGYSQVAHFQSWIFAMVSASCIITQLIYLNKALDTFNTAVVSPIYYAMFTSLTIFVSAI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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