Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003083`

染色体: Chr02 坐标: 51743062-51745022 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003083`
名称	SmilChr02G003083
描述	F-box protein At3g07870-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	51743062 - 51745022 / `-`

ID 对照

NCBI Gene ID	`LOC131010097`
GeneID	`131010097`
locus_tag	`-`
NCBI Name	`LOC131010097`
原始查询	`SmilChr02G003083`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box protein At3g07870-like
产物	F-box protein At3g07870-like
Arabidopsis	`AT3G07870` (AT3G07870) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819978] identity=27; qcov=0.974; evalue=2.13e-25; confidence=low
Rice	`Os09g0449600` (OsFbox490) - identity=25.4; qcov=0.9; evalue=1.26e-18; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like); PF24750 (b-prop_At3g26010-like)
InterPro	-
eggNOG	-
NR	GeneID:131010097

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793479.1`
2	Cytoplasm	细胞质	1.00000	`XP_057793479.1`
3	Chromosome	染色体	0.00000	`XP_057793479.1`
4	Centromere	着丝粒	0.00000	`XP_057793479.1`
5	Chromatin	染色质	0.00000	`XP_057793479.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:51743258`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B11,C44
`Chr2:51743320`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B111,B47,C31
`Chr2:51743582`	`TC`	`T`	1bp_deletion	frameshift_variant	3	B117,B24,C42
`Chr2:51743582`	`TC`	`T`	1bp_deletion	CDS_variant	3	B117,B24,C42
`Chr2:51743734`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B72,B80,C7
`Chr2:51743739`	`CG`	`C`	1bp_deletion	frameshift_variant	189	A1,A10,A11,A13,A16,A19,A2,A21,A22,A23,A24,A3,A4,A5,A6,A7,A8,A9,B10,B100,B103,B104,B106,B107,B108,B109,B110,B112,B114,B115,B117,B12,B120,B122,B123,B124,B127,B128,B129,B13,B130,B131,B132,B133,B136,B137,B138,B139,B14,B140,B15,B16,B17,B19,B2,B20,B21,B23,B25,B26,B27,B28,B29,B30,B31,B32,B33,B35,B36,B37,B41,B44,B46,B49,B5,B50,B51,B53,B54,B55,B57,B58,B6,B60,B62,B63,B65,B66,B67,B68,B69,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B88,B9,B90,B92,B93,B99,C1,C10,C11,C12,C13,C15,C16,C17,C2,C20,C21,C22,C23,C25,C27,C28,C3,C30,C31,C32,C33,C34,C35,C36,C37,C4,C40,C42,C45,C46,C47,C48,C5,C51,C52,C53,C54,C56,C58,C59,C60,C61,C62,C63,C65,C67,C68,C69,C7,C70,C72,C73,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C9,D1,D10,D11,D2,D3,D5,D6,D8,D9
`Chr2:51743776`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A3,B60
`Chr2:51743866`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B29,B49,B60,B79
`Chr2:51743868`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:51744409`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr2:51744526`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B106,B48,B63,B73,B89
`Chr2:51744535`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793479.1

380 aa

190

380

F-box

F-box-like

b-prop_At3g26010-like

FBA_3

FBA_1

PF00646 F-box 7-46 aa PF12937 F-box-like 8-44 aa PF24750 b-prop_At3g26010-like 104-245 aa PF08268 FBA_3 106-350 aa PF07734 FBA_1 111-305 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793479.1`	Pfam	`PF00646`	F-box	Domain	7	46	2.3e-08	34.3	F-box domain
`XP_057793479.1`	Pfam	`PF12937`	F-box-like	Domain	8	44	2.4e-06	27.9	F-box-like
`XP_057793479.1`	Pfam	`PF24750`	b-prop_At3g26010-like	Repeat	104	245	6.3e-06	26.2	F-box protein At3g26010-like, beta-propeller
`XP_057793479.1`	Pfam	`PF08268`	FBA_3	Repeat	106	350	1.2e-19	71.2	F-box associated beta propeller domain
`XP_057793479.1`	Pfam	`PF07734`	FBA_1	Repeat	111	305	1.5e-22	80.8	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937496.1
CAAATTTCACGACCTAGTCTATAATTTCTAATGTGCGAAGACAACACATAAAAGTCTGATAAAACGTCAAACTAGCTGTTTGATTTTCTCAGAAAAACATAGAAGACTTGTTCTATTATTTGACTGAAGCCTTGTAGCATATATACTTGATAAAACAATCCGATACCAAAATGAAGCAATTAGATTTGTTCACGAACCTACCATCACACATCATCATCGACATCCTCTCCAGACTCCCCATCGCAACCATCATTCGATGC...

CDS

1 records

下载 CDS FASTA

LOC131010097
ATGAAGCAATTAGATTTGTTCACGAACCTACCATCACACATCATCATCGACATCCTCTCCAGACTCCCCATCGCAACCATCATTCGATGCAAGTTCGTGTGCAAGCCATGGCTCCATCTTCTCCAATCCCACGAATTCGTCGCCCACCATCTCTCCACATCCGCACCCGCCCTCGCCGTCACCCACCACGATTACACCTCATCATCATCACAAATAATATTCTACGAATTCCAAGATGATCACCTCCATCTTGAGCACCA...

Protein

1 records

下载 Protein FASTA

XP_057793479.1
MKQLDLFTNLPSHIIIDILSRLPIATIIRCKFVCKPWLHLLQSHEFVAHHLSTSAPALAVTHHDYTSSSSQIIFYEFQDDHLHLEHHHLHYNPLITINFELPYNKITQGSVNGFLFLRDLNVRPNALYICNPITREYTKIHTPQEFNYTYPQVVTFGFGSSRVSSQHKVVRVFHECIRDQDTYKVLAIPKSECHVYTLGAGSWRSVLPPSAPMLHSCRSIGAFLNGNLHWLVFDLDYKPMISCFDLETELFSTFSAPQIH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器