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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003103

染色体: Chr02 坐标: 51954390-51963076 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003103
名称SmilChr02G003103
描述putative F-box protein At2g02030
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向51954390 - 51963076 / +

ID 对照

NCBI Gene IDLOC131010113
GeneID131010113
locus_tag-
NCBI NameLOC131010113
原始查询SmilChr02G003103

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative F-box protein At2g02030
产物putative F-box protein At2g02030
ArabidopsisAT3G07870 (AT3G07870)
F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819978]
identity=26.2; qcov=0.966; evalue=2.66e-20; confidence=low
RiceOs09g0448100 (OsFbox489)
-
identity=24.1; qcov=0.857; evalue=6.7e-17; confidence=weak
GOGO:0005515 (protein binding)
KEGG-
PfamPF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3)
InterPro-
eggNOG-
NRGeneID:131010113

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057793498.1
2 Cytoplasm 细胞质 1.00000 XP_057793498.1
3 Cytosol 细胞质基质 0.20000 XP_057793498.1
4 Chromosome 染色体 0.00000 XP_057793498.1
5 Centromere 着丝粒 0.00000 XP_057793498.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:51961946 G A EMS_canonical_SNV CDS_variant 1 B83
Chr2:51962138 G A EMS_canonical_SNV CDS_variant 2 B68,B83
Chr2:51962255 T TC 1bp_insertion frameshift_variant 74 A1,A10,A13,A16,A22,A24,A4,A5,A6,B107,B108,B109,B112,B120,B121,B123,B126,B130,B132,B135,B136,B137,B138,B139,B140,B15,B2,B20,B24,B25,B26,B29,B30,B31,B34,B4,B44,B45,B50,B53,B65,B66,B75,B76,B78,B82,B93,B99,C16,C17,C2,C21,C23,C24,C25,C26,C30,C34,C43,C52,C57,C6,C61,C63,C67,C71,C72,C73,C75,C78,C79,C85,D5,D9
Chr2:51962295 G A EMS_canonical_SNV CDS_variant 1 B83
Chr2:51962456 C T EMS_canonical_SNV CDS_variant 3 B74,C83,D3
Chr2:51962462 C T EMS_canonical_SNV CDS_variant 3 B74,C83,D3
Chr2:51962506 G A EMS_canonical_SNV CDS_variant 2 B101,B65
Chr2:51962575 C T EMS_canonical_SNV CDS_variant 1 A23
Chr2:51962580 C T EMS_canonical_SNV CDS_variant 1 D10
Chr2:51962595 C T EMS_canonical_SNV CDS_variant 1 B40
Chr2:51962717 G A EMS_canonical_SNV CDS_variant 3 B137,B76,C85
Chr2:51962768 C CAT 2bp_insertion frameshift_variant 1 B95

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793498.1
435 aa
N
1
218
435
F-box
FBA_3
FBA_1
C
PF00646 F-box 21-57 aa PF08268 FBA_3 100-409 aa PF07734 FBA_1 100-420 aa
XP_057793499.1
435 aa
N
1
218
435
F-box
FBA_3
FBA_1
C
PF00646 F-box 21-57 aa PF08268 FBA_3 100-409 aa PF07734 FBA_1 100-420 aa
XP_057793500.1
435 aa
N
1
218
435
F-box
FBA_3
FBA_1
C
PF00646 F-box 21-57 aa PF08268 FBA_3 100-409 aa PF07734 FBA_1 100-420 aa
XP_057793501.1
435 aa
N
1
218
435
F-box
FBA_3
FBA_1
C
PF00646 F-box 21-57 aa PF08268 FBA_3 100-409 aa PF07734 FBA_1 100-420 aa
XP_057793502.1
435 aa
N
1
218
435
F-box
FBA_3
FBA_1
C
PF00646 F-box 21-57 aa PF08268 FBA_3 100-409 aa PF07734 FBA_1 100-420 aa
XP_057793503.1
435 aa
N
1
218
435
F-box
FBA_3
FBA_1
C
PF00646 F-box 21-57 aa PF08268 FBA_3 100-409 aa PF07734 FBA_1 100-420 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057793498.1 Pfam PF00646 F-box Domain 21 57 6.4e-05 23.4 F-box domain
XP_057793498.1 Pfam PF08268 FBA_3 Repeat 100 409 1.3e-19 71.1 F-box associated beta propeller domain
XP_057793498.1 Pfam PF07734 FBA_1 Repeat 100 420 2.8e-21 76.6 F-box associated beta propeller domain
XP_057793499.1 Pfam PF00646 F-box Domain 21 57 6.4e-05 23.4 F-box domain
XP_057793499.1 Pfam PF08268 FBA_3 Repeat 100 409 1.3e-19 71.1 F-box associated beta propeller domain
XP_057793499.1 Pfam PF07734 FBA_1 Repeat 100 420 2.8e-21 76.6 F-box associated beta propeller domain
XP_057793500.1 Pfam PF00646 F-box Domain 21 57 6.4e-05 23.4 F-box domain
XP_057793500.1 Pfam PF08268 FBA_3 Repeat 100 409 1.3e-19 71.1 F-box associated beta propeller domain
XP_057793500.1 Pfam PF07734 FBA_1 Repeat 100 420 2.8e-21 76.6 F-box associated beta propeller domain
XP_057793501.1 Pfam PF00646 F-box Domain 21 57 6.4e-05 23.4 F-box domain
XP_057793501.1 Pfam PF08268 FBA_3 Repeat 100 409 1.3e-19 71.1 F-box associated beta propeller domain
XP_057793501.1 Pfam PF07734 FBA_1 Repeat 100 420 2.8e-21 76.6 F-box associated beta propeller domain
XP_057793502.1 Pfam PF00646 F-box Domain 21 57 6.4e-05 23.4 F-box domain
XP_057793502.1 Pfam PF08268 FBA_3 Repeat 100 409 1.3e-19 71.1 F-box associated beta propeller domain
XP_057793502.1 Pfam PF07734 FBA_1 Repeat 100 420 2.8e-21 76.6 F-box associated beta propeller domain
XP_057793503.1 Pfam PF00646 F-box Domain 21 57 6.4e-05 23.4 F-box domain
XP_057793503.1 Pfam PF08268 FBA_3 Repeat 100 409 1.3e-19 71.1 F-box associated beta propeller domain
XP_057793503.1 Pfam PF07734 FBA_1 Repeat 100 420 2.8e-21 76.6 F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057937517.1
TTTTTTTTCTTCTTTCTAAATTGAAAATTTCGGCAGTTTGGTTTAGGGTAGATCATGCATTTTTGTTCAATTCCAATTTTACTCTTCAAATTAAATTTATTTCCACCCACTTCTCTTTTAATATATACTAGTACTATTTTTTTTTTCAATTTTCATTTATATTATTTTAATTAAATTTATTTAAAACACACTTCTTGCAAATTTGATCTATCCTTCCACATTACCCATCGATTTCTGATCTTCTCCTGCCACAAAACATC...
XM_057937519.1
TTTCTAAATTGAAAATTTCGGCAGTTTGGTTTAGGGTAGATCATGCATTTTTGTTCAATTCCAATTTTACTCTTCAAATTAAATTTATTTCCACCCACTTCTCTTTTAATATATACTAGTACTATTTTTTTTTTCAATTTTCATTTATATTATTTTAATTAAATTTATTTAAAACACACTTCTTGCAAATTTGATCTATCCTTCCACATTACCCATCGATTTCTGATCTTCTCCTGCCACAAAACATCCATCAATTGCTT...

CDS

6 records

下载 CDS FASTA
LOC131010113
ATGCCAGAAGCCCTCTATCCAGAAATGAAACGACAAAGGAAACAAGATTTCCTCACATATCTACCATCACAAATCATCACCAGTATCCTTTCAAGCCTTCCCATTCGAACCATTGTACAATACAAGTGTGTTTGCAAACAATGGCTCCATCTGCTTGAGACTGATGAGTTTGTCCGTTCACATCTTGCTATATCAGTCCCCACTCTGGCTGTCTTGACACCAACATGGAAACCATGTCCGAACTCAATTTCTGAATCTGA...
LOC131010113
ATGCCAGAAGCCCTCTATCCAGAAATGAAACGACAAAGGAAACAAGATTTCCTCACATATCTACCATCACAAATCATCACCAGTATCCTTTCAAGCCTTCCCATTCGAACCATTGTACAATACAAGTGTGTTTGCAAACAATGGCTCCATCTGCTTGAGACTGATGAGTTTGTCCGTTCACATCTTGCTATATCAGTCCCCACTCTGGCTGTCTTGACACCAACATGGAAACCATGTCCGAACTCAATTTCTGAATCTGA...

Protein

6 records

下载 Protein FASTA
XP_057793498.1
MPEALYPEMKRQRKQDFLTYLPSQIITSILSSLPIRTIVQYKCVCKQWLHLLETDEFVRSHLAISVPTLAVLTPTWKPCPNSISESEYGERTRSLPVILQRDSSLCIVFEFEDDQNLERHDHHFSPLTNFDFPHSAEIKGSANGLLFLSKPRSEAHSEDHYVCNPITREYVEVRCPKELVHLFPNQFTCPEVELFFPRYPQPATYGFGASKITGQHKVVRIFHGRVTAPGGRRIVPIFECHVHTLGTGSWRRVESSAPFQ...
XP_057793499.1
MPEALYPEMKRQRKQDFLTYLPSQIITSILSSLPIRTIVQYKCVCKQWLHLLETDEFVRSHLAISVPTLAVLTPTWKPCPNSISESEYGERTRSLPVILQRDSSLCIVFEFEDDQNLERHDHHFSPLTNFDFPHSAEIKGSANGLLFLSKPRSEAHSEDHYVCNPITREYVEVRCPKELVHLFPNQFTCPEVELFFPRYPQPATYGFGASKITGQHKVVRIFHGRVTAPGGRRIVPIFECHVHTLGTGSWRRVESSAPFQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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