Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003104`

染色体: Chr02 坐标: 51966912-51969101 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003104`
名称	SmilChr02G003104
描述	F-box/kelch-repeat protein At3g06240-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	51966912 - 51969101 / `+`

ID 对照

NCBI Gene ID	`LOC131010114`
GeneID	`131010114`
locus_tag	`-`
NCBI Name	`LOC131010114`
原始查询	`SmilChr02G003104`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g06240-like
产物	F-box/kelch-repeat protein At3g06240-like
Arabidopsis	`AT3G06240` (AT3G06240) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:819798] identity=28.4; qcov=0.926; evalue=1.34e-22; confidence=low
Rice	`Os09g0449600` (OsFbox490) - identity=24.3; qcov=0.952; evalue=2.36e-16; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like); PF24750 (b-prop_At3g26010-like)
InterPro	-
eggNOG	-
NR	GeneID:131010114

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793504.1`
2	Cytoplasm	细胞质	0.80000	`XP_057793504.1`
3	Cytosol	细胞质基质	0.20000	`XP_057793504.1`
4	Chromosome	染色体	0.00000	`XP_057793504.1`
5	Centromere	着丝粒	0.00000	`XP_057793504.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:51967818`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B74,C83,D10,D3
`Chr2:51967822`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B74,C83,D3
`Chr2:51967893`	`T`	`TG`	1bp_insertion	frameshift_variant	78	A14,A20,A23,A24,A4,A7,A9,B109,B111,B113,B115,B12,B120,B122,B130,B133,B138,B139,B14,B18,B22,B27,B3,B31,B35,B37,B4,B41,B47,B48,B54,B58,B63,B67,B75,B77,B78,B79,B81,B83,B86,B88,B90,B92,B95,B97,B98,C10,C11,C18,C19,C21,C22,C27,C31,C32,C36,C4,C40,C41,C42,C43,C45,C54,C56,C64,C66,C68,C69,C73,C76,C78,C8,C83,C9,D11,D7,D8
`Chr2:51968096`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:51968246`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr2:51968372`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B104,B33,B80,C60
`Chr2:51968420`	`CTG`	`C`	2bp_deletion	frameshift_variant	1	B107
`Chr2:51968420`	`CTG`	`C`	2bp_deletion	CDS_variant	1	B107
`Chr2:51968508`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,B65,D11
`Chr2:51968604`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B78,B95,C14
`Chr2:51968875`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B33,B80,C60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793504.1

433 aa

216

433

F-box-like

F-box

FBA_1

FBA_3

b-prop_At3g26010-like

PF12937 F-box-like 12-47 aa PF00646 F-box 13-49 aa PF07734 FBA_1 122-346 aa PF08268 FBA_3 123-377 aa PF24750 b-prop_At3g26010-like 128-283 aa

XP_057793505.1

433 aa

216

433

F-box-like

F-box

FBA_1

FBA_3

b-prop_At3g26010-like

PF12937 F-box-like 12-47 aa PF00646 F-box 13-49 aa PF07734 FBA_1 122-346 aa PF08268 FBA_3 123-377 aa PF24750 b-prop_At3g26010-like 128-283 aa

XP_057793506.1

433 aa

216

433

F-box-like

F-box

FBA_1

FBA_3

b-prop_At3g26010-like

PF12937 F-box-like 12-47 aa PF00646 F-box 13-49 aa PF07734 FBA_1 122-346 aa PF08268 FBA_3 123-377 aa PF24750 b-prop_At3g26010-like 128-283 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793504.1`	Pfam	`PF12937`	F-box-like	Domain	12	47	6.2e-07	29.8	F-box-like
`XP_057793504.1`	Pfam	`PF00646`	F-box	Domain	13	49	4.6e-07	30.2	F-box domain
`XP_057793504.1`	Pfam	`PF07734`	FBA_1	Repeat	122	346	4.1e-21	76.0	F-box associated beta propeller domain
`XP_057793504.1`	Pfam	`PF08268`	FBA_3	Repeat	123	377	2.4e-20	73.5	F-box associated beta propeller domain
`XP_057793504.1`	Pfam	`PF24750`	b-prop_At3g26010-like	Repeat	128	283	1.1e-06	28.7	F-box protein At3g26010-like, beta-propeller
`XP_057793505.1`	Pfam	`PF12937`	F-box-like	Domain	12	47	6.2e-07	29.8	F-box-like
`XP_057793505.1`	Pfam	`PF00646`	F-box	Domain	13	49	4.6e-07	30.2	F-box domain
`XP_057793505.1`	Pfam	`PF07734`	FBA_1	Repeat	122	346	4.1e-21	76.0	F-box associated beta propeller domain
`XP_057793505.1`	Pfam	`PF08268`	FBA_3	Repeat	123	377	2.4e-20	73.5	F-box associated beta propeller domain
`XP_057793505.1`	Pfam	`PF24750`	b-prop_At3g26010-like	Repeat	128	283	1.1e-06	28.7	F-box protein At3g26010-like, beta-propeller
`XP_057793506.1`	Pfam	`PF12937`	F-box-like	Domain	12	47	6.2e-07	29.8	F-box-like
`XP_057793506.1`	Pfam	`PF00646`	F-box	Domain	13	49	4.6e-07	30.2	F-box domain
`XP_057793506.1`	Pfam	`PF07734`	FBA_1	Repeat	122	346	4.1e-21	76.0	F-box associated beta propeller domain
`XP_057793506.1`	Pfam	`PF08268`	FBA_3	Repeat	123	377	2.4e-20	73.5	F-box associated beta propeller domain
`XP_057793506.1`	Pfam	`PF24750`	b-prop_At3g26010-like	Repeat	128	283	1.1e-06	28.7	F-box protein At3g26010-like, beta-propeller

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057937522.1
CCTAGAATCTACCCGGTTGCGGCTGTCAGTCTGTCACTTCACTCACCAGTGGCAAGTCACAACTACAACCGCTACACACGAGTTGATTCACGGCGGCGCCACCACCACCAACCTAACTCATTGGTCATGTGAATTCACGGCGGAGAAGTAGAATGATCCACTGGAAGCCTCTGTGCCCATTTTCAAATCCTACACAAGGAGAAGTCTCAAGTTGGTGAACGCCGGAAGCCCTCTATAGTCTATCCAGAAATGAAACGAAA...

XM_057937521.1
TCTACCCGGTTGCGGCTGTCAGTCTGTCACTTCACTCACCAGTGGCAAGTCACAACTACAACCGCTACACACGAGTTGATTCACGGCGGCGCCACCACCACCAACCTAACTCATTGGTCATGTGAATTCACGGCGGAGAAGTTTCTTGCAGTAGAATGATCCACTGGAAGCCTCTGTGCCCATTTTCAAATCCTACACAAGGAGAAGTCTCAAGTTGGTGAACGCCGGAAGCCCTCTATAGTCTATCCAGAAATGAAACG...

CDS

3 records

下载 CDS FASTA

LOC131010114
ATGAAACGAAAAATGAAACGGGATTTCTTCACATATCTACCATCAGAAGTCATTATTAATATCCTTTCAAGACTCCCTATTCGAACCATTGCACGAAGCAAGTGTGTTTGCAAACCATGGCTCCATCTGCTTGAGACTGATGAGTTTGTCAGTTCCCATCATGCTGAATCGGTCCCCACTCTGGTTGTCTTGACACCATTTTGGACACATAATCCGTTCTCGTTTTTTGAATATGAATATGTACGTAGAGAGACGCGTTG...

Protein

3 records

下载 Protein FASTA

XP_057793504.1
MKRKMKRDFFTYLPSEVIINILSRLPIRTIARSKCVCKPWLHLLETDEFVSSHHAESVPTLVVLTPFWTHNPFSFFEYEYVRRETRCESHTMVDRQSLCTVYEFEDDHNLKQRDLQYNQLTRFYFPHRVEIMGSANGLLFLSKQSEVHYVCNPITREYVEVHFPEELIQPCPEDEEDEVDPEILEEPVYDDHQSVTYGFGVSKITGKHKVVRISHGFVTDQGGRRIIPKSVCHVHTLGTGSWRHVESGAPFEYSERTSCV...

XP_057793505.1
MKRKMKRDFFTYLPSEVIINILSRLPIRTIARSKCVCKPWLHLLETDEFVSSHHAESVPTLVVLTPFWTHNPFSFFEYEYVRRETRCESHTMVDRQSLCTVYEFEDDHNLKQRDLQYNQLTRFYFPHRVEIMGSANGLLFLSKQSEVHYVCNPITREYVEVHFPEELIQPCPEDEEDEVDPEILEEPVYDDHQSVTYGFGVSKITGKHKVVRISHGFVTDQGGRRIIPKSVCHVHTLGTGSWRHVESGAPFEYSERTSCV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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