当前解析结果
SmilChr02G003108| 统一新 Gene ID | SmilChr02G003108 |
|---|---|
| 名称 | SmilChr02G003108 |
| 描述 | probable leucine-rich repeat receptor-like protein kinase At1g35710 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 52070873 - 52071691 / + |
| NCBI Gene ID | LOC131009704 |
|---|---|
| GeneID | 131009704 |
| locus_tag | - |
| NCBI Name | LOC131009704 |
| 原始查询 | SmilChr02G003108 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable leucine-rich repeat receptor-like protein kinase At1g35710 |
| 产物 | probable leucine-rich repeat receptor-like protein kinase At1g35710 |
| Arabidopsis | AT5G63930 (AT5G63930)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836514] identity=38.5; qcov=0.926; evalue=8.85e-44; confidence=medium |
| Rice | Os11g0172150- identity=39.2; qcov=0.956; evalue=4.41e-45; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009704 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057793098.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057793098.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793098.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793098.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793098.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:52070986 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:52070998 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:52071157 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B110,C25,D2 |
Chr2:52071188 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr2:52071189 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,B41,C5 |
Chr2:52071190 |
CA |
C |
1bp_deletion | frameshift_variant | 52 | A11,A21,A3,A7,B102,B110,B124,B127,B133,B15,B16,B20,B25,B26,B36,B38,B43,B50,B55,B57,B62,B78,B91,B94,B95,C10,C14,C15,C20,C23,C24,C25,C32,C33,C4,C40,C46,C48,C49,C52,C56,C65,C66,C70,C76,C79,C80,C85,C87,D2,D5,D6 |
Chr2:52071226 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B26,B41,C5 |
Chr2:52071243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
Chr2:52071256 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B46 |
Chr2:52071256 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B46 |
Chr2:52071340 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
Chr2:52071371 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B46 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793098.1PF00560
LRR_1 7-28 aa
PF00560
LRR_1 87-108 aa
PF13855
LRR_8 183-242 aa
PF00560
LRR_1 184-205 aa
PF00560
LRR_1 208-229 aa
PF00560
LRR_1 233-253 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793098.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 7 | 28 | 1.6e-24 | 81.4 | Leucine Rich Repeat |
XP_057793098.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 87 | 108 | 1.6e-24 | 81.4 | Leucine Rich Repeat |
XP_057793098.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 183 | 242 | 1.3e-14 | 54.4 | Leucine rich repeat |
XP_057793098.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 184 | 205 | 1.6e-24 | 81.4 | Leucine Rich Repeat |
XP_057793098.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 208 | 229 | 1.6e-24 | 81.4 | Leucine Rich Repeat |
XP_057793098.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 233 | 253 | 1.6e-24 | 81.4 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。