当前解析结果
SmilChr02G003123| 统一新 Gene ID | SmilChr02G003123 |
|---|---|
| 名称 | SmilChr02G003123 |
| 描述 | uncharacterized SmilChr02G003123 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 52232452 - 52238966 / + |
| NCBI Gene ID | LOC131010126 |
|---|---|
| GeneID | 131010126 |
| locus_tag | - |
| NCBI Name | LOC131010126 |
| 原始查询 | SmilChr02G003123 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840335]; symbol=AT1G34340; hit=AT1G34340; species=arabidopsis; confidence=high |
| 产物 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840335]; symbol=AT1G34340; hit=AT1G34340; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G34340 (AT1G34340)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840335] identity=57; qcov=0.962; evalue=0; confidence=high |
| Rice | Os01g0871100- identity=55; qcov=0.978; evalue=0; confidence=high |
| GO | GO:0034338 (short-chain carboxylesterase activity); GO:0044255 (GO:0044255); GO:0047372 (monoacylglycerol lipase activity) |
| KEGG | - |
| Pfam | PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010126 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057793521.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057793521.1 |
| 3 | Lipid droplet | 脂滴 | 0.20000 | XP_057793521.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057793521.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057793521.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:52232724 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr2:52233424 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,B5 |
Chr2:52237469 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B133 |
Chr2:52237702 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057793521.1PF12146
Hydrolase_4 168-380 aa
PF00561
Abhydrolase_1 168-409 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793521.1 |
Pfam | PF12146 |
Hydrolase_4 | Domain | 168 | 380 | 1.1e-09 | 38.7 | Serine aminopeptidase, S33 |
XP_057793521.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 168 | 409 | 1.9e-10 | 41.6 | alpha/beta hydrolase fold |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。