当前解析结果
SmilChr02G003127| 统一新 Gene ID | SmilChr02G003127 |
|---|---|
| 名称 | SmilChr02G003127 |
| 描述 | uncharacterized SmilChr02G003127 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 52297912 - 52299027 / + |
| NCBI Gene ID | LOC131009711 |
|---|---|
| GeneID | 131009711 |
| locus_tag | - |
| NCBI Name | LOC131009711 |
| 原始查询 | SmilChr02G003127 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os01g0872900; species=rice; confidence=high |
| 产物 | hit=Os01g0872900; species=rice; confidence=high |
| Arabidopsis | AT2G13770 (AT2G13770)nuclease [Source:NCBI gene (formerly Entrezgene);Acc:815861] identity=54.3; qcov=0.342; evalue=4.89e-29; confidence=low |
| Rice | Os01g0872900- identity=54.5; qcov=0.83; evalue=2.34e-118; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF04827 (Plant_tran); PF13359 (DDE_Tnp_4); PF28509 (DUF8418) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009711 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793104.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057793104.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057793104.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057793104.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057793104.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:52297918 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,C10 |
Chr2:52297944 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,C5 |
Chr2:52297951 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B133,B31,B44,C19 |
Chr2:52297976 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A13,B81 |
Chr2:52297988 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr2:52297993 |
A |
AT |
1bp_insertion | frameshift_variant | 13 | A1,B10,B111,B112,B120,B136,B47,C22,C31,C40,C5,D10,D11 |
Chr2:52297994 |
T |
TTA |
2bp_insertion | frameshift_variant | 1 | B125 |
Chr2:52297994 |
T |
TTA |
2bp_insertion | CDS_variant | 1 | B125 |
Chr2:52298003 |
AAT |
A |
2bp_deletion | frameshift_variant | 38 | A11,A16,A22,A24,A4,A5,B108,B111,B122,B124,B128,B2,B26,B27,B42,B43,B5,B56,B58,B61,B63,B65,B72,B78,B8,B83,B96,B99,C22,C25,C43,C5,C71,C76,C78,C79,C82,D9 |
Chr2:52298004 |
A |
AT |
1bp_insertion | stop_gained,frameshift_variant | 38 | A1,A13,A3,A6,A8,B102,B105,B118,B120,B127,B18,B19,B20,B31,B38,B44,B53,B60,B7,B70,B71,B75,B85,B86,B87,C1,C10,C28,C3,C34,C35,C45,C69,C75,C8,C87,D10,D2 |
Chr2:52298050 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C33 |
Chr2:52298128 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A21,C45,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793104.1PF28509
DUF8418 45-79 aa
PF04827
Plant_tran 147-337 aa
PF13359
DDE_Tnp_4 200-327 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793104.1 |
Pfam | PF28509 |
DUF8418 | Domain | 45 | 79 | 1.9e-15 | 57.1 | Domain of unknown function (DUF8418) |
XP_057793104.1 |
Pfam | PF04827 |
Plant_tran | Family | 147 | 337 | 6.6e-80 | 268.3 | Plant transposon protein |
XP_057793104.1 |
Pfam | PF13359 |
DDE_Tnp_4 | Domain | 200 | 327 | 7.9e-06 | 26.3 | DDE superfamily endonuclease |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。