Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003132`

染色体: Chr02 坐标: 52347677-52353096 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003132`
名称	SmilChr02G003132
描述	uncharacterized SmilChr02G003132
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	52347677 - 52353096 / `-`

ID 对照

NCBI Gene ID	`LOC131010134`
GeneID	`131010134`
locus_tag	`-`
NCBI Name	`LOC131010134`
原始查询	`SmilChr02G003132`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	5'-3' exonuclease family protein [Source:NCBI gene (formerly Entrezgene);Acc:840340]; symbol=AT1G34380; hit=AT1G34380; species=arabidopsis; confidence=medium
产物	5'-3' exonuclease family protein [Source:NCBI gene (formerly Entrezgene);Acc:840340]; symbol=AT1G34380; hit=AT1G34380; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G34380` (AT1G34380) 5'-3' exonuclease family protein [Source:NCBI gene (formerly Entrezgene);Acc:840340] identity=67; qcov=0.455; evalue=1.6e-138; confidence=medium
Rice	`Os01g0874800` (P0698A10.12-1) - identity=64.8; qcov=0.476; evalue=1.03e-136; confidence=medium
GO	GO:0003677 (DNA binding); GO:0005515 (protein binding); GO:0017108 (5'-flap endonuclease activity); GO:0033567 (DNA replication, Okazaki fragment processing)
KEGG	-
Pfam	PF00515 (TPR_1); PF01367 (5_3_exonuc); PF02739 (5_3_exonuc_N); PF07719 (TPR_2); PF13181 (TPR_8); PF13432 (TPR_16); PF14559 (TPR_19)
InterPro	-
eggNOG	-
NR	GeneID:131010134

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057793528.1`
2	Chloroplast membrane	叶绿体膜	0.40000	`XP_057793528.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057793528.1`
4	Chloroplast thylakoid	类囊体	0.20000	`XP_057793528.1`
5	Nucleus	细胞核	0.00000	`XP_057793528.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:52347903`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B1
`Chr2:52347903`	`GC`	`G`	1bp_deletion	CDS_variant	1	B1
`Chr2:52347981`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr2:52349001`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:52350760`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr2:52351354`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B58,C40
`Chr2:52351582`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C27,C61,C7
`Chr2:52351583`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793528.1

626 aa

313

626

5_3_exonuc_N

5_3_exonuc

TPR_8

TPR_16

TPR_19

TPR_2

TPR_8

TPR_1

PF02739 5_3_exonuc_N 110-238 aa PF01367 5_3_exonuc 264-355 aa PF13181 TPR_8 529-561 aa PF13432 TPR_16 534-592 aa PF14559 TPR_19 540-597 aa PF07719 TPR_2 564-596 aa PF13181 TPR_8 564-596 aa PF00515 TPR_1 565-596 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793528.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	110	238	6.6e-21	75.4	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057793528.1`	Pfam	`PF01367`	5_3_exonuc	Domain	264	355	5.9e-13	49.9	5'-3' exonuclease, C-terminal SAM fold
`XP_057793528.1`	Pfam	`PF13181`	TPR_8	Repeat	529	561	7.7e-12	45.1	Tetratricopeptide repeat
`XP_057793528.1`	Pfam	`PF13432`	TPR_16	Repeat	534	592	5e-08	34.0	Tetratricopeptide repeat
`XP_057793528.1`	Pfam	`PF14559`	TPR_19	Repeat	540	597	2e-06	28.7	Tetratricopeptide repeat
`XP_057793528.1`	Pfam	`PF07719`	TPR_2	Repeat	564	596	1.4e-15	56.8	Tetratricopeptide repeat
`XP_057793528.1`	Pfam	`PF13181`	TPR_8	Repeat	564	596	7.7e-12	45.1	Tetratricopeptide repeat
`XP_057793528.1`	Pfam	`PF00515`	TPR_1	Repeat	565	596	6.9e-13	48.5	Tetratricopeptide repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937545.1
ATGTAGCGGGGCCCAGATGAAAACCGAAGAGATAACGCGCGCAGCAAAAATCTTGAACAACACCGGAATTTCTCGGAGCAGCCCATCTCATGTTCTATGGATTGTCATCTGCAAATCCGTAAAACTTCCCAATTAATTTCTTCTTGCGACATTCTAAACCCCTCCAGAATTTATCATCTGCCGTTCTTAATTCCTGTTCCGAATTCTAGAACGAAAAAGGCCGAATCTTGGAAGTTATCATCCACGAATGGCGAGCAATC...

CDS

1 records

下载 CDS FASTA

LOC131010134
ATGGATTGTCATCTGCAAATCCGTAAAACTTCCCAATTAATTTCTTCTTGCGACATTCTAAACCCCTCCAGAATTTATCATCTGCCGTTCTTAATTCCTGTTCCGAATTCTAGAACGAAAAAGGCCGAATCTTGGAAGTTATCATCCACGAATGGCGAGCAATCGGCTGTTCACGATGAAGCCCATTTGCCCCAACTGCGCAAGAATGGTGCTTTGAGTTTAGATGGTGGTAGTAGTGGCTACCATAAGATGGAAAGAAA...

Protein

1 records

下载 Protein FASTA

XP_057793528.1
MDCHLQIRKTSQLISSCDILNPSRIYHLPFLIPVPNSRTKKAESWKLSSTNGEQSAVHDEAHLPQLRKNGALSLDGGSSGYHKMERKRRVFFLDVNPLCYRGSTPSLDSFAHWISLFFSQVSLNDPVVAVLDGEGGNEHRRQLLPSYKANRKKMLQQFPAAEMSTWASVGRSKKLVMDVLQKCNVPVVKIKGHEADDVVTTLVHQVLHKGYQAVIASPDKDFKQLISEDVQMVMPIQELDRWSFYTLKHYVAQYNCDPQS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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