Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003165`

染色体: Chr02 坐标: 52681247-52684207 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003165`
名称	SmilChr02G003165
描述	calcium-dependent protein kinase 11-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	52681247 - 52684207 / `-`

ID 对照

NCBI Gene ID	`LOC131010156`
GeneID	`131010156`
locus_tag	`-`
NCBI Name	`LOC131010156`
原始查询	`SmilChr02G003165`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calcium-dependent protein kinase 11-like
产物	calcium-dependent protein kinase 11-like
Arabidopsis	`AT1G35670` (CDPK2) calcium-dependent protein kinase 2 [Source:NCBI gene (formerly Entrezgene);Acc:840471] identity=78.7; qcov=0.97; evalue=0; confidence=high
Rice	`Os11g0171500` (CDPK24) calcium-dependent protein kinase 24-like [Source:NCBI gene (formerly Entrezgene);Acc:4349899] identity=75.6; qcov=0.946; evalue=0; confidence=high
GO	GO:0004683 (calcium/calmodulin-dependent protein kinase activity); GO:0005509 (calcium ion binding); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009931 (calcium-dependent protein serine/threonine kinase activity); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction); GO:0046777 (protein autophosphorylation)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00036 (EF-hand_1); PF00069 (Pkinase); PF06293 (Kdo); PF07714 (PK_Tyr_Ser-Thr); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:131010156

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057793554.1`
2	Cytoplasm	细胞质	0.80000	`XP_057793554.1`
3	Nucleus	细胞核	0.60000	`XP_057793554.1`
4	Cell membrane	细胞膜	0.20000	`XP_057793554.1`
5	Chromosome	染色体	0.00000	`XP_057793554.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:52681495`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B77,C34
`Chr2:52681496`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B52,B80,B95,C83
`Chr2:52681779`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr2:52682057`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr2:52682525`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B119
`Chr2:52682780`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,B18
`Chr2:52683781`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793554.1

503 aa

252

503

Pkinase

PK_Tyr_Ser-Thr

Kdo

EF-hand_8

EF-hand_5

EF-hand_1

EF-hand_6

EF-hand_7

EF-hand_8

EF-hand_7

EF-hand_6

EF-hand_5

EF-hand_1

EF-hand_8

EF-hand_5

EF-hand_1

PF00069 Pkinase 28-286 aa PF07714 PK_Tyr_Ser-Thr 30-280 aa PF06293 Kdo 104-174 aa PF13833 EF-hand_8 316-356 aa PF13202 EF-hand_5 334-356 aa PF00036 EF-hand_1 334-360 aa PF13405 EF-hand_6 334-362 aa PF13499 EF-hand_7 334-394 aa PF13833 EF-hand_8 346-393 aa PF13499 EF-hand_7 403-465 aa PF13405 EF-hand_6 406-434 aa PF13202 EF-hand_5 408-428 aa PF00036 EF-hand_1 408-432 aa PF13833 EF-hand_8 418-466 aa PF13202 EF-hand_5 440-464 aa PF00036 EF-hand_1 440-466 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793554.1`	Pfam	`PF00069`	Pkinase	Domain	28	286	1.3e-79	268.0	Protein kinase domain
`XP_057793554.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	30	280	1.2e-25	91.0	Protein tyrosine and serine/threonine kinase
`XP_057793554.1`	Pfam	`PF06293`	Kdo	Family	104	174	1.5e-05	25.3	Lipopolysaccharide kinase (Kdo/WaaP) family
`XP_057793554.1`	Pfam	`PF13833`	EF-hand_8	Domain	316	356	6.8e-17	61.7	EF-hand domain pair
`XP_057793554.1`	Pfam	`PF13202`	EF-hand_5	Domain	334	356	3.5e-21	74.4	EF hand
`XP_057793554.1`	Pfam	`PF00036`	EF-hand_1	Domain	334	360	2.1e-31	105.8	EF hand domain
`XP_057793554.1`	Pfam	`PF13405`	EF-hand_6	Domain	334	362	4.2e-26	88.8	EF-hand domain
`XP_057793554.1`	Pfam	`PF13499`	EF-hand_7	Domain	334	394	2.5e-29	102.1	EF-hand domain pair
`XP_057793554.1`	Pfam	`PF13833`	EF-hand_8	Domain	346	393	6.8e-17	61.7	EF-hand domain pair
`XP_057793554.1`	Pfam	`PF13499`	EF-hand_7	Domain	403	465	2.5e-29	102.1	EF-hand domain pair
`XP_057793554.1`	Pfam	`PF13405`	EF-hand_6	Domain	406	434	4.2e-26	88.8	EF-hand domain
`XP_057793554.1`	Pfam	`PF13202`	EF-hand_5	Domain	408	428	3.5e-21	74.4	EF hand
`XP_057793554.1`	Pfam	`PF00036`	EF-hand_1	Domain	408	432	2.1e-31	105.8	EF hand domain
`XP_057793554.1`	Pfam	`PF13833`	EF-hand_8	Domain	418	466	6.8e-17	61.7	EF-hand domain pair
`XP_057793554.1`	Pfam	`PF13202`	EF-hand_5	Domain	440	464	3.5e-21	74.4	EF hand
`XP_057793554.1`	Pfam	`PF00036`	EF-hand_1	Domain	440	466	2.1e-31	105.8	EF hand domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937571.1
ATTCATATTCATTCCAAAAAGCGAAAAAAAAGTAAGTCCCAATCGGCAAAATAAAAAAACACATTTTCCAAAAGGCAAAAAACTGTAGTGAACTATGCGCAACCACAAACCCCGCCAAATACCGTTAGCCAAAAACCAAAAGTTAGTTAGTTTCCTTAAGAAAAAATAATAAACAAAAGAAAAACCTTTTTCCATCAAAAACCAAATTAGTTTGTTCCTTTGAAATCAAGGAAGATGAAGAAACGATCGACGGGATCAAC...

CDS

1 records

下载 CDS FASTA

LOC131010156
ATGAAGAAACGATCGACGGGATCAACATCAAAGGTGTCGGCAACGATCCTCCCGTACCAAACACCGCGGCTGCGCGACCACTACAGCCTGGGGCGCAAGCTCGGGCAGGGGCAGTTCGGCACGACGTACCACTGCATAGAGAAGGCGACGGGGCTGGAATTCGCGTGCAAGTCCATCCCGAAGCGCAAGCTCCTCTGCAAAGAAGATTGCGATGATGTGTGGCGGGAGATCCAGATCATGCACCACCTCTCCGAGTACCC...

Protein

1 records

下载 Protein FASTA

XP_057793554.1
MKKRSTGSTSKVSATILPYQTPRLRDHYSLGRKLGQGQFGTTYHCIEKATGLEFACKSIPKRKLLCKEDCDDVWREIQIMHHLSEYPSVVRIKGTYEDNMFVHLVMELCKGGELFDRIVQKGHYSERKAAQLMKTIVGVVEACHSLGVMHRDLKPENFLFDTPDEDAKLKATDFGLSVFYKPGQYLSDVVGSPYYVAPEVLHKYYGPEIDVWSAGVILYILLCGVPPFWAETDNGIFRQILKGKIDFVSEPWPHISDSAK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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