Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003170`

染色体: Chr02 坐标: 52716643-52723008 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003170`
名称	SmilChr02G003170
描述	ABC transporter G family member 25-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	52716643 - 52723008 / `-`

ID 对照

NCBI Gene ID	`LOC131010160`
GeneID	`131010160`
locus_tag	`-`
NCBI Name	`LOC131010160`
原始查询	`SmilChr02G003170`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ABC transporter G family member 25-like
产物	ABC transporter G family member 25-like
Arabidopsis	`AT1G71960` (ABCG25) ATP-binding cassette family G25 [Source:NCBI gene (formerly Entrezgene);Acc:843527] identity=63.1; qcov=0.959; evalue=0; confidence=high
Rice	`Os11g0177400` (OsABCG27) - identity=59.8; qcov=0.711; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity)
KEGG	smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)); smil04981 (Folate transport and metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF12698 (ABC2_membrane_3); PF19055 (ABC2_membrane_7)
InterPro	-
eggNOG	-
NR	GeneID:131010160

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057793561.1`
2	Nucleus	细胞核	0.00000	`XP_057793561.1`
3	Chromosome	染色体	0.00000	`XP_057793561.1`
4	Centromere	着丝粒	0.00000	`XP_057793561.1`
5	Chromatin	染色质	0.00000	`XP_057793561.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:52716988`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B29,C85,D10
`Chr2:52717056`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A4,B81,B83,B96
`Chr2:52717128`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr2:52717136`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr2:52717146`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C56
`Chr2:52717170`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B39,C84
`Chr2:52717443`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B93,C2
`Chr2:52717548`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B59
`Chr2:52717548`	`AC`	`A`	1bp_deletion	CDS_variant	1	B59
`Chr2:52717632`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B140,B93,C17,C2,C63
`Chr2:52717664`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr2:52717711`	`CCA`	`C`	2bp_deletion	frameshift_variant	38	A15,A20,A24,A25,A7,B105,B107,B117,B118,B18,B24,B38,B47,B6,B73,B85,B86,B91,B98,C10,C11,C14,C19,C22,C28,C31,C33,C40,C41,C48,C53,C58,C61,C63,C78,C81,C87,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793561.1

658 aa

329

658

ABC_tran

ABC2_membrane_7

ABC2_membrane

ABC2_membrane_3

ABC2_membrane_7

PF00005 ABC_tran 86-238 aa PF19055 ABC2_membrane_7 267-333 aa PF01061 ABC2_membrane 389-594 aa PF12698 ABC2_membrane_3 439-651 aa PF19055 ABC2_membrane_7 443-561 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793561.1`	Pfam	`PF00005`	ABC_tran	Domain	86	238	7.4e-30	105.1	ABC transporter
`XP_057793561.1`	Pfam	`PF19055`	ABC2_membrane_7	Family	267	333	8.1e-17	61.9	ABC-2 type transporter
`XP_057793561.1`	Pfam	`PF01061`	ABC2_membrane	Domain	389	594	6e-43	147.5	ABC-2 type transporter
`XP_057793561.1`	Pfam	`PF12698`	ABC2_membrane_3	Family	439	651	3.4e-11	43.6	ABC-2 family transporter protein
`XP_057793561.1`	Pfam	`PF19055`	ABC2_membrane_7	Family	443	561	8.1e-17	61.9	ABC-2 type transporter

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937578.1
GGGAGCAACAGCTTTGCTTCTCTCTCATCAATTTTCGTTTCTTGCTTCCTATTTCTCTCTCTCTCCCTCAACATCGCCACTACTTTTTTCACATAAATTTTTTTGTATCTTAAATTTTGCAACTGTACCATCCTTAATTTCGACGCAATTCTGAGAAATTTAGACAGAGAAAATACAATGTTGGTGTCTGGTGAAGCAGCAGAAGCCCCCCCTAGTAATAATGGAGGAGCAAATTCCACACAAAATCAAAATAATTTGGA...

CDS

1 records

下载 CDS FASTA

LOC131010160
ATGTTGGTGTCTGGTGAAGCAGCAGAAGCCCCCCCTAGTAATAATGGAGGAGCAAATTCCACACAAAATCAAAATAATTTGGATCGGAATTTGCAGTGTTCTTTTCCCATCATGCTTAAGTTTGTGGATGTTTCATATAGAGTGAAGCTGCATGGCGGCGGCGGGAAATCAAGAACCGGCGGAATAATGAGCATGCTCGGCGGCGGAGGCGGCGATGTGGAGAATCCGGCGCCGCGCCACCAGGAGCGGACGATTTTGAA...

Protein

1 records

下载 Protein FASTA

XP_057793561.1
MLVSGEAAEAPPSNNGGANSTQNQNNLDRNLQCSFPIMLKFVDVSYRVKLHGGGGKSRTGGIMSMLGGGGGDVENPAPRHQERTILNGITGTAVPGRVLAIMGPSGSGKSTLLNALAGRFQGGQGLAGAILFNGRKFSKQIAKKTGFVAQDDVLYPHLTVRETLIFCSLLRLPGSVGRDEKIAAAEAAIAELGLGRCADTIIGNSFVRGVSGGERKRVSIAHEMLVDPSLLVLDEPTSGLDATAAYRLVAALGGLAARGK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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