Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003178`

染色体: Chr02 坐标: 52937243-52940759 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003178`
名称	SmilChr02G003178
描述	receptor homology region, transmembrane domain- and RING domain-containing protein 2-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	52937243 - 52940759 / `+`

ID 对照

NCBI Gene ID	`LOC131010165`
GeneID	`131010165`
locus_tag	`-`
NCBI Name	`LOC131010165`
原始查询	`SmilChr02G003178`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor homology region, transmembrane domain- and RING domain-containing protein 2-like
产物	receptor homology region%2C transmembrane domain- and RING domain-containing protein 2-like
Arabidopsis	`AT1G71980` (AT1G71980) Protease-associated (PA) RING/U-box zinc finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:843529] identity=61.2; qcov=1.02; evalue=3.22e-168; confidence=high
Rice	`Os08g0104300` (OsRMR2) - identity=57.2; qcov=0.996; evalue=5.93e-162; confidence=high
GO	-
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF02225 (PA); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131010165

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057793568.1`
2	Vacuole membrane	液泡膜	1.00000	`XP_057793568.1`
3	Golgi apparatus	高尔基体	0.40000	`XP_057793568.1`
4	Trans-golgi network	Trans-golgi network	0.20000	`XP_057793568.1`
5	Nucleus	细胞核	0.00000	`XP_057793568.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:52938280`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr2:52938409`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B89,C1
`Chr2:52939571`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,C30,D4
`Chr2:52939676`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B115,B5,B59,C45
`Chr2:52940147`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:52940253`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:52940260`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A24,B108,B44,B5,C37
`Chr2:52940388`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr2:52940476`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A21,B32

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793568.1

460 aa

230

460

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

PF02225 PA 73-142 aa PF13639 zf-RING_2 235-278 aa PF17123 zf-RING_11 236-263 aa PF00097 zf-C3HC4 236-277 aa PF13923 zf-C3HC4_2 236-277 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793568.1`	Pfam	`PF02225`	PA	Domain	73	142	2.7e-12	47.3	PA domain
`XP_057793568.1`	Pfam	`PF13639`	zf-RING_2	Domain	235	278	8.5e-13	49.1	Ring finger domain
`XP_057793568.1`	Pfam	`PF17123`	zf-RING_11	Domain	236	263	3.5e-10	40.1	RING-like zinc finger
`XP_057793568.1`	Pfam	`PF00097`	zf-C3HC4	Domain	236	277	1.6e-07	31.8	Zinc finger, C3HC4 type (RING finger)
`XP_057793568.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	236	277	3.9e-07	30.5	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937585.1
TTGGAGGACCAATTTACAAAAACCACAAAATTTATATAAACTGTTTAAACTAAATTTTCCTTTTTCTAATTATTTCCGAGAGGATATTCACGCGAAGATTATCACTACAGCACACCCACAAAAAAGACAAAATCCCCATAAATAGCAAATCGAGCTTTGATTGGTAGTATATAAAATTCTGTCTCTGAGAGAAATTTTACCTCAATTTTAACACGATTAATCCCAAAAGCCCTAGAAACTGCAGCATGGAAGCTGATGTC...

CDS

1 records

下载 CDS FASTA

LOC131010165
ATGAAGATGTCGGATTTCTGGGTATTAATCTGCTGCTTTTTTTGTTTAATGGGCTCTTTCGCGGCTTACGGCAATGTGGTTTTGATAGGCAACAATGTTACTTTGTCGTTCGAAGACATTGAAGCTAATTTTGCTCCGTCTGTTAAAGGATCCGGGATATGTGGGACGCTGTATGTAGCCGAGCCTTTGGATGCATGCTCACCACTGACTAATAAAGTCGTTCCAGTAGTGAATAGCACCAAGTCTCCGTTTGTGTTGAT...

Protein

1 records

下载 Protein FASTA

XP_057793568.1
MKMSDFWVLICCFFCLMGSFAAYGNVVLIGNNVTLSFEDIEANFAPSVKGSGICGTLYVAEPLDACSPLTNKVVPVVNSTKSPFVLIVRGGCSFDEKVRRAQAAGFTAAIVYDNEDGDLVAMAGNSAGIKIHAVFVTKVCAQTLMKYANASDTEVWIVPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRREWPQAPRVREFHGMSSRLVKAMPSLVFTAVLEDNCTSATCAICLEDYSMGEKLRILPCRHKFHA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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