Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003185`

染色体: Chr02 坐标: 52998792-53001288 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003185`
名称	SmilChr02G003185
描述	F-box/LRR-repeat protein At3g26922-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	52998792 - 53001288 / `+`

ID 对照

NCBI Gene ID	`LOC131010171`
GeneID	`131010171`
locus_tag	`-`
NCBI Name	`LOC131010171`
原始查询	`SmilChr02G003185`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/LRR-repeat protein At3g26922-like
产物	F-box/LRR-repeat protein At3g26922-like
Arabidopsis	`AT4G15060` (AT4G15060) FBD, F-box/LRR protein [Source:NCBI gene (formerly Entrezgene);Acc:827169] identity=30.5; qcov=0.476; evalue=2.56e-18; confidence=low
Rice	`Os01g0730200` (OsFbox036) - identity=29.3; qcov=0.36; evalue=1.83e-12; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370)
InterPro	-
eggNOG	-
NR	GeneID:131010171

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793572.1`
2	Chromosome	染色体	0.00000	`XP_057793572.1`
3	Centromere	着丝粒	0.00000	`XP_057793572.1`
4	Chromatin	染色质	0.00000	`XP_057793572.1`
5	Telomere	端粒	0.00000	`XP_057793572.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:52998867`	`TG`	`T`	1bp_deletion	frameshift_variant	34	A16,A18,A19,A2,A4,A5,A6,A9,B1,B122,B124,B126,B140,B17,B20,B21,B26,B27,B33,B51,B52,B53,B7,B74,B79,C25,C30,C34,C43,C5,C55,C6,C78,C79
`Chr2:52998936`	`TTG`	`T`	2bp_deletion	frameshift_variant	36	A18,A19,A5,B10,B100,B105,B118,B126,B127,B134,B19,B26,B34,B8,B85,B94,B99,C13,C15,C17,C21,C29,C34,C38,C39,C4,C59,C63,C7,C70,C77,C85,C86,D2,D5,D9
`Chr2:52999030`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	B135,C19
`Chr2:52999030`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B135,C19
`Chr2:52999056`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B135,C19
`Chr2:52999066`	`C`	`CTG`	2bp_insertion	frameshift_variant	2	B135,C19
`Chr2:52999066`	`C`	`CTG`	2bp_insertion	CDS_variant	2	B135,C19
`Chr2:52999079`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B135,B58,C18,C19
`Chr2:52999099`	`CCA`	`C`	2bp_deletion	frameshift_variant	14	B135,B14,B28,B40,B43,B44,B5,B58,B8,C18,C19,C34,C48,D5
`Chr2:52999183`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A3,B127
`Chr2:52999205`	`AC`	`A`	1bp_deletion	frameshift_variant	1	A18
`Chr2:52999205`	`AC`	`A`	1bp_deletion	CDS_variant	1	A18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793572.1

604 aa

302

604

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

PF00646 F-box 122-157 aa PF23622 LRR_At1g61320_AtMIF1 205-385 aa PF24758 LRR_At5g56370 233-369 aa

XP_057793574.1

556 aa

278

556

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

PF00646 F-box 122-157 aa PF23622 LRR_At1g61320_AtMIF1 204-385 aa PF24758 LRR_At5g56370 233-369 aa

XP_057793575.1

550 aa

275

550

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

PF00646 F-box 122-157 aa PF23622 LRR_At1g61320_AtMIF1 204-385 aa PF24758 LRR_At5g56370 233-369 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793572.1`	Pfam	`PF00646`	F-box	Domain	122	157	2.6e-07	31.0	F-box domain
`XP_057793572.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	205	385	6.4e-07	29.8	At1g61320/AtMIF1, LRR domain
`XP_057793572.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	233	369	6.2e-13	49.7	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057793574.1`	Pfam	`PF00646`	F-box	Domain	122	157	2.3e-07	31.1	F-box domain
`XP_057793574.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	204	385	5.7e-07	30.0	At1g61320/AtMIF1, LRR domain
`XP_057793574.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	233	369	5.3e-13	49.9	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057793575.1`	Pfam	`PF00646`	F-box	Domain	122	157	2.3e-07	31.1	F-box domain
`XP_057793575.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	204	385	5.6e-07	30.0	At1g61320/AtMIF1, LRR domain
`XP_057793575.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	233	369	5.2e-13	49.9	FBD-associated F-box protein At5g56370, LRR repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057937589.1
AAACAAATTTTGGGTGTGCAAATGTTAGTACTTAGTATGTTAGTTTATGTAAAAATTCGAAATGGGGTTGGGGGGTGGGGGGTGGGGGACTGGGGGTTACTCCTTGTTCTTCTCTCATTCATCTCTAATAAAACTAGTAAAATATTGTCTCTACACTCTGCAACGAACTCTTCTTTCAGCAAAAACATGCTCTAAAATCCCTCTCCGATCACCAAAAAACCCATTTCTTCAACTCATTCAAAACCCCCGAATCCCCAAAA...

XM_057937591.1
AAACAAATTTTGGGTGTGCAAATGTTAGTACTTAGTATGTTAGTTTATGTAAAAATTCGAAATGGGGTTGGGGGGTGGGGGGTGGGGGACTGGGGGTTACTCCTTGTTCTTCTCTCATTCATCTCTAATAAAACTAGTAAAATATTGTCTCTACACTCTGCAACGAACTCTTCTTTCAGCAAAAACATGCTCTAAAATCCCTCTCCGATCACCAAAAAACCCATTTCTTCAACTCATTCAAAACCCCCGAATCCCCAAAA...

CDS

3 records

下载 CDS FASTA

LOC131010171
ATGGGGTTGGGGGGTGGGGGGTGGGGGACTGGGGGTTACTCCTTGTTCTTCTCTCATTCATCTCTAATAAAACTAGTAAAATATTGTCTCTACACTCTGCAACGAACTCTTCTTTCAGCAAAAACATGCTCTAAAATCCCTCTCCGATCACCAAAAAACCCATTTCTTCAACTCATTCAAAACCCCCGAATCCCCAAAACCTTCAAAAAAGCCCTCCAAAATTCCTCGATTCACATCCGAAATTTCCCAAAATTCACCGC...

Protein

3 records

下载 Protein FASTA

XP_057793572.1
MGLGGGGWGTGGYSLFFSHSSLIKLVKYCLYTLQRTLLSAKTCSKIPLRSPKNPFLQLIQNPRIPKTFKKALQNSSIHIRNFPKFTAEPTLITTLPISAMEPKRKKSRKIEESIEKPYPDRLSSLPDSVLTHVFSFLDFESVVRTSVLSKRYKHLWTLTPSLDFHLSEHGDDKIRPNDHRLRARDKEGCNSVFELYVNHILQLREHCNLSQFRLSLHRHARPEFVQNCLIYAVEHKVQHLKLRGIFNRKPLALPGILLDL...

XP_057793574.1
MGLGGGGWGTGGYSLFFSHSSLIKLVKYCLYTLQRTLLSAKTCSKIPLRSPKNPFLQLIQNPRIPKTFKKALQNSSIHIRNFPKFTAEPTLITTLPISAMEPKRKKSRKIEESIEKPYPDRLSSLPDSVLTHVFSFLDFESVVRTSVLSKRYKHLWTLTPSLDFHLSEHGDDKIRPNDHRLRARDKEGCNSVFELYVNHILQLREHCNLSQFRLSLHRHARPEFVQNCLIYAVEHKVQHLKLRGIFNRKPLALPGILLDL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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