Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003186`

染色体: Chr02 坐标: 53001275-53002920 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003186`
名称	SmilChr02G003186
描述	GCN5-related N-acetyltransferase 10, chloroplastic
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	53001275 - 53002920 / `-`

ID 对照

NCBI Gene ID	`LOC131010173`
GeneID	`131010173`
locus_tag	`-`
NCBI Name	`LOC131010173`
原始查询	`SmilChr02G003186`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GCN5-related N-acetyltransferase 10, chloroplastic
产物	GCN5-related N-acetyltransferase 10%2C chloroplastic
Arabidopsis	`AT1G72030` (AT1G72030) Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843534] identity=55.8; qcov=0.644; evalue=3.42e-59; confidence=high
Rice	`Os07g0264800` - identity=59.9; qcov=0.638; evalue=1.66e-70; confidence=high
GO	GO:0005737 (cytoplasm); GO:0007064 (mitotic sister chromatid cohesion); GO:0008080 (N-acetyltransferase activity); GO:0016573 (GO:0016573); GO:0031415 (NatA complex)
KEGG	-
Pfam	PF00583 (Acetyltransf_1); PF13508 (Acetyltransf_7)
InterPro	-
eggNOG	-
NR	GeneID:131010173

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057793577.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057793578.1`
3	Nucleus	细胞核	0.00000	`XP_057793577.1`
4	Chromosome	染色体	0.00000	`XP_057793577.1`
5	Centromere	着丝粒	0.00000	`XP_057793577.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:53001411`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr2:53001442`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A23,B40,B66,B95,C22
`Chr2:53001465`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B102,C61
`Chr2:53001499`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B72,C74
`Chr2:53001517`	`G`	`A`	EMS_canonical_SNV	stop_gained	35	A1,A11,B108,B111,B112,B120,B13,B14,B2,B31,B42,B43,B44,B45,B46,B58,B67,B75,B77,B81,B93,C11,C2,C23,C24,C26,C40,C42,C57,C69,C82,C9,D3,D8,D9
`Chr2:53001568`	`G`	`A`	EMS_canonical_SNV	stop_gained	15	A19,A2,B125,B126,B17,B21,B33,B51,B52,B7,B80,C27,C55,C60,C62
`Chr2:53001607`	`G`	`A`	EMS_canonical_SNV	stop_gained	9	A22,B104,B128,B58,B65,B78,C36,C8,C82
`Chr2:53001613`	`AT`	`A`	1bp_deletion	frameshift_variant	7	B1,B140,B35,B53,C17,C30,D4
`Chr2:53001704`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr2:53001814`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A23,B40,B66,B95,C22
`Chr2:53002246`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr2:53002345`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B69,C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793578.1

309 aa

154

309

Acetyltransf_1

Acetyltransf_7

PF00583 Acetyltransf_1 178-281 aa PF13508 Acetyltransf_7 183-282 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793578.1`	Pfam	`PF00583`	Acetyltransf_1	Family	178	281	3.1e-09	37.8	Acetyltransferase (GNAT) family
`XP_057793578.1`	Pfam	`PF13508`	Acetyltransf_7	Domain	183	282	1.4e-06	29.3	Acetyltransferase (GNAT) domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057937595.1
CCACAGCCACAAACAATTATAGCCTTATCTATCAAATATTTGTTTGTGGAGGAAAAAATATTCGCATTCGCAAGGGCAATTCTACGTGTGGAAATGAAAGCAAACACAATCTATCAAGACTCACACATGATCAAGAAACATTGAATTTTTGTCATGAATTGTAATCATAATCCATGACAATTTAGTGAGCATATGATCATGTTAGATATCAAATTAGATGTCATGTAATGATGATGATGATATGATCAGAATGGACTACT...

XM_057937594.1
CCACAGCCACAAACAATTATAGCCTTATCTATCAAATATTTGTTTGTGGAGGAAAAAATATTCGCATTCGCAAGGGCAATTCTACGTGTGGAAATGAAAGCAAACACAATCTATCAAGACTCACACATGATCAAGAAACATTGAATTTTTGTCATGAATTGTAATCATAATCCATGACAATTTAGTGAGCATATGATCATGTTAGATATCAAATTAGATGTCATGTAATGATGATGATGATATGATCAGAATGGACTACT...

CDS

2 records

下载 CDS FASTA

LOC131010173
ATGGCTCATTTGCATCACAATCTCCCCATTGTGGCTAAAGGGTCCGGACAGGAACTCTTTTGGAGATGTCGAGGAATGATGTTTTGCAACATGGGTTTAGGTTTACCCAATCAAAGAAGAGGTGGAAGAATCAAGAATAGAGGGTTCGTTCATTGGTGCACTTCTTCAACATCGACACCAACATCATCATCGGCCGATCAGCAAGCGAATTTGGCCGGTGGTGAGAAGCTCGACTCGAGAATAAACGAGGACGATAGGGT...

Protein

2 records

下载 Protein FASTA

XP_057793577.1
MAHLHHNLPIVAKGSGQELFWRCRGMMFCNMGLGLPNQRRGGRIKNRGFVHWCTSSTSTPTSSSADQQANLAGGEKLDSRINEDDRVLHFTSISAEHYVSSTHEKLDSKINEDDLRYLVRDGKWQVRRMLETQEEMREVANVQAEAFHEPAFFFDDVFFKFFKAEVFAGLMYRLRNSPPDRYACLVAEARDEVQVSKKEVAGVVDATVLREDSVLEHLLGAKEYIYVSGIAVLNKFRFQSHQNFIKRKRQLTKTSHHSFL...

XP_057793578.1
MAHLHHNLPIVAKGSGQELFWRCRGMMFCNMGLGLPNQRRGGRIKNRGFVHWCTSSTSTPTSSSADQQANLAGGEKLDSRINEDDRVLHFTSISAEHYVSSTHEKLDSKINEDDLRYLVRDGKWQVRRMLETQEEMREVANVQAEAFHEPAFFFDDVFFKFFKAEVFAGLMYRLRNSPPDRYACLVAEARDEVQVSKKEVAGVVDATVLREDSVLEHLLGAKEYIYVSGIAVLNKFRRQKVATALLNACDALSATWGFDY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器