Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003190`

染色体: Chr02 坐标: 53054672-53059747 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003190`
名称	SmilChr02G003190
描述	F-box protein CPR1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	53054672 - 53059747 / `+`

ID 对照

NCBI Gene ID	`LOC131010178`
GeneID	`131010178`
locus_tag	`-`
NCBI Name	`LOC131010178`
原始查询	`SmilChr02G003190`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box protein CPR1-like
产物	F-box protein CPR1-like
Arabidopsis	`AT4G12560` (CPR1) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869] identity=24.9; qcov=0.852; evalue=1.01e-09; confidence=weak
Rice	`Os09g0449600` (OsFbox490) - identity=24.3; qcov=0.921; evalue=5.75e-21; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1)
InterPro	-
eggNOG	-
NR	GeneID:131010178

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057793583.1`
2	Cytoplasm	细胞质	0.40000	`XP_057793583.1`
3	Cytosol	细胞质基质	0.40000	`XP_057793583.1`
4	Cell membrane	细胞膜	0.20000	`XP_057793583.1`
5	Chromosome	染色体	0.00000	`XP_057793583.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:53055342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr2:53055351`	`AG`	`A`	1bp_deletion	frameshift_variant	3	A24,C40,C78
`Chr2:53055351`	`AG`	`A`	1bp_deletion	CDS_variant	3	A24,C40,C78
`Chr2:53055375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr2:53055397`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A3,B60,B82,C1
`Chr2:53055678`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B83
`Chr2:53055717`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B72,C74
`Chr2:53055825`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A23,A24,C78
`Chr2:53055933`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:53055963`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr2:53055966`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr2:53056060`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793583.1

406 aa

203

406

F-box

FBA_1

PF00646 F-box 42-79 aa PF07734 FBA_1 159-293 aa

XP_057793584.1

406 aa

203

406

F-box

FBA_1

PF00646 F-box 42-79 aa PF07734 FBA_1 159-293 aa

XP_057793586.1

406 aa

203

406

F-box

FBA_1

PF00646 F-box 42-79 aa PF07734 FBA_1 159-293 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793583.1`	Pfam	`PF00646`	F-box	Domain	42	79	8.1e-08	32.6	F-box domain
`XP_057793583.1`	Pfam	`PF07734`	FBA_1	Repeat	159	293	3.7e-07	30.2	F-box associated beta propeller domain
`XP_057793584.1`	Pfam	`PF00646`	F-box	Domain	42	79	8.1e-08	32.6	F-box domain
`XP_057793584.1`	Pfam	`PF07734`	FBA_1	Repeat	159	293	3.7e-07	30.2	F-box associated beta propeller domain
`XP_057793586.1`	Pfam	`PF00646`	F-box	Domain	42	79	8.1e-08	32.6	F-box domain
`XP_057793586.1`	Pfam	`PF07734`	FBA_1	Repeat	159	293	3.7e-07	30.2	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057937601.1
TATTGTTTTGTTGTGGATGTTCCGGCGCTGCCCACCCCGGCCCAATCAAATCCTAAATAGGGTAAATAATAACCAAACACCCTCTAAATAGGATCTTCCAATGTCAATACGCATTCGCGTCTGAGAAAGATTTCACGCTCATCGGCGGCCGATCGCCTGCTTCCAAGAGGTAGAACACATCAGTTACAGACAACCCAATTTTACTGTAAACAGAAAGAGTGGCACGATGACAAAATTCGCACGAGGAGAAACGAGTAGCT...

XM_057937600.1
GTTCCGGCGCTGCCCACCCCGGCCCAATCAAATCCTAAATAGGGTAAATAATAACCAAACACCCTCTAAATAGGATCTTCCAATGTCAATACGCATTCGCGTCTGAGAAAGATTTCACGCTCATCGGCGGCCGATCGCCTGCTTCCAAGAGGTAGAACACATCAGTTACAGACAACCCAATTTTACTGTAAACAGAAAGAGTGGCACGATGACAAAATTCGCACGAGGAGAAACGAGTAGCTTGCTGAGGCGGGCGGAAG...

CDS

3 records

下载 CDS FASTA

LOC131010178
ATGACAAAATTCGCACGAGGAGAAACGAGTAGCTTGCTGAGGCGGGCGGAAGAAGAAATGAAGCTGCTCGAAGAAGAGAAGAAGCAGCAGCAGGAGCCAAAGAGCAGTCCCATTGTTGTGCCTCACCTCCCCATAGATTGCATCTTCCACATCATTGCCTGGCTTCCACTTGAATCATTACTAGCATCAAGGTTCGTCTCCAAGGCCTGGTATGGGATTGTCAATGCTCCTGATTTTATCAATGCCCATCTGCAACGATC...

Protein

3 records

下载 Protein FASTA

XP_057793583.1
MTKFARGETSSLLRRAEEEMKLLEEEKKQQQEPKSSPIVVPHLPIDCIFHIIAWLPLESLLASRFVSKAWYGIVNAPDFINAHLQRSSIGLIYLTPDVKSARKVDFSVDGKVLGLDSVSVLHWHLFNPRTRFQIKYLEMGDGKSTIKEYNVTCTGHIKATCHGLIVLENTAKRKGLIVMNPVTREVKTEPLGTICSFQSESYGLAFCEETSRYKLVHLFKDALQYIGCEIMCIGGGTWRIVEGPPHGLMSWLGYPPVSAI...

XP_057793584.1
MTKFARGETSSLLRRAEEEMKLLEEEKKQQQEPKSSPIVVPHLPIDCIFHIIAWLPLESLLASRFVSKAWYGIVNAPDFINAHLQRSSIGLIYLTPDVKSARKVDFSVDGKVLGLDSVSVLHWHLFNPRTRFQIKYLEMGDGKSTIKEYNVTCTGHIKATCHGLIVLENTAKRKGLIVMNPVTREVKTEPLGTICSFQSESYGLAFCEETSRYKLVHLFKDALQYIGCEIMCIGGGTWRIVEGPPHGLMSWLGYPPVSAI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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