Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003197`

染色体: Chr02 坐标: 53134753-53138329 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003197`
名称	SmilChr02G003197
描述	adenylate kinase, chloroplastic
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	53134753 - 53138329 / `+`

ID 对照

NCBI Gene ID	`LOC131010186`
GeneID	`131010186`
locus_tag	`-`
NCBI Name	`LOC131010186`
原始查询	`SmilChr02G003197`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	adenylate kinase, chloroplastic
产物	adenylate kinase%2C chloroplastic
Arabidopsis	`AT5G47840` (AMK2) adenosine monophosphate kinase [Source:NCBI gene (formerly Entrezgene);Acc:834835] identity=69.9; qcov=0.821; evalue=3.86e-123; confidence=high
Rice	`Os08g0109300` (AK1) - identity=69.9; qcov=0.811; evalue=1.05e-113; confidence=high
GO	GO:0004017 (AMP kinase activity); GO:0004127 (GO:0004127); GO:0004550 (nucleoside diphosphate kinase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0009142 (nucleoside triphosphate biosynthetic process)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00730 (Thiamine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00406 (ADK); PF13207 (AAA_17)
InterPro	-
eggNOG	-
NR	GeneID:131010186

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057793594.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057793594.1`
3	Nucleus	细胞核	0.00000	`XP_057793594.1`
4	Chromosome	染色体	0.00000	`XP_057793594.1`
5	Centromere	着丝粒	0.00000	`XP_057793594.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:53134898`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B100,D4
`Chr2:53134994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A24,C40,C78
`Chr2:53136714`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B89,C1
`Chr2:53136806`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr2:53137291`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B138,B32
`Chr2:53137367`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr2:53137549`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr2:53137558`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B125,C37,C48,C65,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793594.1

291 aa

146

291

ADK

AAA_17

PF00406 ADK 80-257 aa PF13207 AAA_17 82-200 aa

XP_057793595.1

291 aa

146

291

ADK

AAA_17

PF00406 ADK 80-257 aa PF13207 AAA_17 82-200 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793594.1`	Pfam	`PF00406`	ADK	Domain	80	257	1.9e-48	165.1	Adenylate kinase
`XP_057793594.1`	Pfam	`PF13207`	AAA_17	Domain	82	200	5e-26	92.3	AAA domain
`XP_057793595.1`	Pfam	`PF00406`	ADK	Domain	80	257	1.9e-48	165.1	Adenylate kinase
`XP_057793595.1`	Pfam	`PF13207`	AAA_17	Domain	82	200	5e-26	92.3	AAA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057937611.1
AATAATGATTACATTAAAATAATAACAACAATAATTATAATTCTTGTAGTATATAGTTTCATTTCCGTTGAACATTTCACACCTTCACCGGAAATTAAGGGACTGTTTGGGGGGAACCGAAGAGGATGGCTTCTTCCTGCAGCTGCAACTCTGTGAATCTCAAAGCAGCATCTTTCAATCCAAACAAGCCCTTAACTTGCCCTCCCAATCAGCTCCTCCCCACTTCGAAATCTTCGACGCTCCCTTCTCTCTCTATTCGT...

XM_057937612.1
TAATTATAATTCTTGTAGTATATAGTTTCATTTCCGTTGAACATTTCACACCTTCACCGGAAATTAAGGGACTGTTTGGGGGGAACCGAAGAGGATGGCTTCTTCCTGCAGCTGCAACTCTGTGAATCTCAAAGCAGCATCTTTCAATCCAAACAAGCCCTTAACTTGCCCTCCCAATCAGCTCCTCCCCACTTCGAAATCTTCGACGCTCCCTTCTCTCTCTATTCGTTTGAATCAAAATCCATCGCAAACCCGTTTCA...

CDS

2 records

下载 CDS FASTA

LOC131010186
ATGGCTTCTTCCTGCAGCTGCAACTCTGTGAATCTCAAAGCAGCATCTTTCAATCCAAACAAGCCCTTAACTTGCCCTCCCAATCAGCTCCTCCCCACTTCGAAATCTTCGACGCTCCCTTCTCTCTCTATTCGTTTGAATCAAAATCCATCGCAAACCCGTTTCAGGAAATCGAAAGCTCTTCCCGGTTTGCTGGTTGTTGCTTCTGGTCAAATGGCGGAGCCTTTGAGGGTGATGATATCAGGAGCGCCTGCTTCTGG...

Protein

2 records

下载 Protein FASTA

XP_057793594.1
MASSCSCNSVNLKAASFNPNKPLTCPPNQLLPTSKSSTLPSLSIRLNQNPSQTRFRKSKALPGLLVVASGQMAEPLRVMISGAPASGKGTQCELITKKYDLVHIAAGDLLRAEVAAETENGKRAKEFMEMGKLVPDEIVVMMVKERLSRQDSQENGWLLDGYPRSKSQATALKEFGFNPDIFILLEVPEEILVERVVGRRLDPVTGKIYHLTYSPPETEEIAARLTQRFDDTEEKVKLRLLTHNSNVESVLSLYNDRIVK...

XP_057793595.1
MASSCSCNSVNLKAASFNPNKPLTCPPNQLLPTSKSSTLPSLSIRLNQNPSQTRFRKSKALPGLLVVASGQMAEPLRVMISGAPASGKGTQCELITKKYDLVHIAAGDLLRAEVAAETENGKRAKEFMEMGKLVPDEIVVMMVKERLSRQDSQENGWLLDGYPRSKSQATALKEFGFNPDIFILLEVPEEILVERVVGRRLDPVTGKIYHLTYSPPETEEIAARLTQRFDDTEEKVKLRLLTHNSNVESVLSLYNDRIVK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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