Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003218`

染色体: Chr02 坐标: 53358199-53362131 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003218`
名称	SmilChr02G003218
描述	gibberellin 20 oxidase 2-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	53358199 - 53362131 / `-`

ID 对照

NCBI Gene ID	`LOC131010204`
GeneID	`131010204`
locus_tag	`-`
NCBI Name	`LOC131010204`
原始查询	`SmilChr02G003218`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	gibberellin 20 oxidase 2-like
产物	gibberellin 20 oxidase 2-like
Arabidopsis	`AT5G51810` (GA20OX2) gibberellin 20 oxidase 2 [Source:NCBI gene (formerly Entrezgene);Acc:835256] identity=48.8; qcov=0.943; evalue=1.49e-116; confidence=high
Rice	`Os01g0883800` (C20ox2) - identity=49.4; qcov=0.949; evalue=2.93e-113; confidence=high
GO	GO:0009416 (response to light stimulus); GO:0009686 (gibberellin biosynthetic process); GO:0009826 (unidimensional cell growth); GO:0009908 (flower development); GO:0045544 (gibberellin 20-oxidase activity)
KEGG	smil00904 (Diterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF03171 (2OG-FeII_Oxy); PF14226 (DIOX_N)
InterPro	-
eggNOG	-
NR	GeneID:131010204

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057793603.1`
2	Cytosol	细胞质基质	1.00000	`XP_057793603.1`
3	Nucleus	细胞核	0.20000	`XP_057793603.1`
4	Chromosome	染色体	0.00000	`XP_057793603.1`
5	Centromere	着丝粒	0.00000	`XP_057793603.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:53358433`	`GC`	`G`	1bp_deletion	frameshift_variant	6	B112,B38,B39,C13,C59,C84
`Chr2:53358605`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B40
`Chr2:53358605`	`TG`	`T`	1bp_deletion	CDS_variant	1	B40
`Chr2:53358606`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr2:53359223`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B140,B82,C86,D2
`Chr2:53359881`	`G`	`GGA`	2bp_insertion	frameshift_variant	1	B104
`Chr2:53359881`	`G`	`GGA`	2bp_insertion	CDS_variant	1	B104
`Chr2:53359950`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr2:53359999`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr2:53360049`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B24,B78,B95,C14,C83
`Chr2:53360125`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr2:53360181`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B1,B100,B68,C41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793603.1

350 aa

175

350

DIOX_N

2OG-FeII_Oxy

PF14226 DIOX_N 40-135 aa PF03171 2OG-FeII_Oxy 196-293 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793603.1`	Pfam	`PF14226`	DIOX_N	Family	40	135	3.4e-18	67.1	non-haem dioxygenase in morphine synthesis N-terminal
`XP_057793603.1`	Pfam	`PF03171`	2OG-FeII_Oxy	Domain	196	293	1.5e-32	112.6	2OG-Fe(II) oxygenase superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937620.1
TCGAATCTCAACTTTTGTTTTCATCTTCTCAAATGGATTCCAACACTGCATTCGACAGCTTTGTGTATCCAAATTTCTCCAAATTAGATTTAGAAAAATTCATTTGGCCCAAACAGGAAAACCACTCTTCGAATGAAGAGCTGAACGAGCCGTTGATCGACCTCGAGGGCGGCGCGGCCGCAACGGCGGATCTGGTTCGATCAGCTTGCCTGAGGCACGGCTTGTTCCAAGTGATCAACCACGGCGTGGATTTGAACCTC...

CDS

1 records

下载 CDS FASTA

LOC131010204
ATGGATTCCAACACTGCATTCGACAGCTTTGTGTATCCAAATTTCTCCAAATTAGATTTAGAAAAATTCATTTGGCCCAAACAGGAAAACCACTCTTCGAATGAAGAGCTGAACGAGCCGTTGATCGACCTCGAGGGCGGCGCGGCCGCAACGGCGGATCTGGTTCGATCAGCTTGCCTGAGGCACGGCTTGTTCCAAGTGATCAACCACGGCGTGGATTTGAACCTCATAAATTCAGTAAATGATCACGTGAATTTCTT...

Protein

1 records

下载 Protein FASTA

XP_057793603.1
MDSNTAFDSFVYPNFSKLDLEKFIWPKQENHSSNEELNEPLIDLEGGAAATADLVRSACLRHGLFQVINHGVDLNLINSVNDHVNFFFNLPIDAKMRVHRLPGSFWGYSFAHADRFSLNLPWKEIFSCIFRQDASDSEGGLFFESAFGHEFQKIRLDFEKYCDAMKKLSLSIMEILGMSLGVDKVYYKDFFEDGSSLLRCNFYPRCEEAAQTLGTGPHCDPTALTILYQDQVGGLQVFVDDRWKSVTPRPGALVVNLGDT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器