当前解析结果
SmilChr02G003228| 统一新 Gene ID | SmilChr02G003228 |
|---|---|
| 名称 | SmilChr02G003228 |
| 描述 | multiple C2 domain and transmembrane region protein 6 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 53549063 - 53552447 / - |
| NCBI Gene ID | LOC131010212 |
|---|---|
| GeneID | 131010212 |
| locus_tag | - |
| NCBI Name | LOC131010212 |
| 原始查询 | SmilChr02G003228 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | multiple C2 domain and transmembrane region protein 6 |
| 产物 | multiple C2 domain and transmembrane region protein 6 |
| Arabidopsis | AT1G22610 (AT1G22610)C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838867] identity=57.8; qcov=1.06; evalue=0; confidence=high |
| Rice | Os04g0691800- identity=52.6; qcov=1.06; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00168 (C2); PF08372 (PRT_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010212 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057793613.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057793613.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057793613.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057793613.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057793613.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:53549311 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr2:53549351 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B24,C80 |
Chr2:53549355 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,C80 |
Chr2:53549379 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B95 |
Chr2:53549428 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B24,B54,C22,C80 |
Chr2:53549450 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B24,B54,C19,C22,C80 |
Chr2:53549492 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | B111,C31 |
Chr2:53549492 |
GA |
G |
1bp_deletion | CDS_variant | 2 | B111,C31 |
Chr2:53549511 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B78,B95,C14,C19,C83 |
Chr2:53549601 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr2:53549643 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,B125,C37,C65,D7 |
Chr2:53549669 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | B114,B125 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793613.1PF00168
C2 3-101 aa
PF00168
C2 248-334 aa
PF00168
C2 409-501 aa
PF00168
C2 570-676 aa
PF08372
PRT_C 822-978 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793613.1 |
Pfam | PF00168 |
C2 | Domain | 3 | 101 | 1.9e-86 | 285.8 | C2 domain |
XP_057793613.1 |
Pfam | PF00168 |
C2 | Domain | 248 | 334 | 1.9e-86 | 285.8 | C2 domain |
XP_057793613.1 |
Pfam | PF00168 |
C2 | Domain | 409 | 501 | 1.9e-86 | 285.8 | C2 domain |
XP_057793613.1 |
Pfam | PF00168 |
C2 | Domain | 570 | 676 | 1.9e-86 | 285.8 | C2 domain |
XP_057793613.1 |
Pfam | PF08372 |
PRT_C | Family | 822 | 978 | 2.4e-65 | 219.8 | Plant phosphoribosyltransferase C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。