当前解析结果
SmilChr02G003237| 统一新 Gene ID | SmilChr02G003237 |
|---|---|
| 名称 | SmilChr02G003237 |
| 描述 | uncharacterized SmilChr02G003237 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 53642064 - 53645421 / - |
| NCBI Gene ID | LOC131010223 |
|---|---|
| GeneID | 131010223 |
| locus_tag | - |
| NCBI Name | LOC131010223 |
| 原始查询 | SmilChr02G003237 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0106900; species=rice; confidence=medium |
| 产物 | hit=Os08g0106900; species=rice; confidence=medium |
| Arabidopsis | AT5G41980 (AT5G41980)nuclease [Source:NCBI gene (formerly Entrezgene);Acc:834203] identity=34.5; qcov=0.896; evalue=6.77e-68; confidence=low |
| Rice | Os08g0106900- identity=39.2; qcov=0.973; evalue=1.5e-83; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF01609 (DDE_Tnp_1); PF04827 (Plant_tran); PF13359 (DDE_Tnp_4); PF26138 (DUF8040) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010223 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793629.1 |
| 2 | Chromosome | 染色体 | 0.40000 | XP_057793629.1 |
| 3 | Telomere | 端粒 | 0.20000 | XP_057793629.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793629.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793629.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:53642968 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B35 |
Chr2:53642968 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr2:53642969 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,B48 |
Chr2:53642985 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,B35 |
Chr2:53642988 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr2:53643035 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | B1,B2 |
Chr2:53643035 |
AG |
A |
1bp_deletion | CDS_variant | 2 | B1,B2 |
Chr2:53643038 |
A |
AC |
1bp_insertion | frameshift_variant | 2 | B1,B2 |
Chr2:53643038 |
A |
AC |
1bp_insertion | CDS_variant | 2 | B1,B2 |
Chr2:53643048 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B59,B76,C37 |
Chr2:53643079 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B87,C37,C55,C59,D8 |
Chr2:53643091 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793629.1PF26138
DUF8040 64-151 aa
PF04827
Plant_tran 173-345 aa
PF01609
DDE_Tnp_1 175-342 aa
PF13359
DDE_Tnp_4 182-343 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793629.1 |
Pfam | PF26138 |
DUF8040 | Domain | 64 | 151 | 1.4e-23 | 83.3 | Domain of unknown function (DUF8040) |
XP_057793629.1 |
Pfam | PF04827 |
Plant_tran | Family | 173 | 345 | 8.2e-07 | 29.6 | Plant transposon protein |
XP_057793629.1 |
Pfam | PF01609 |
DDE_Tnp_1 | Domain | 175 | 342 | 1.7e-10 | 41.7 | Transposase DDE domain |
XP_057793629.1 |
Pfam | PF13359 |
DDE_Tnp_4 | Domain | 182 | 343 | 5.5e-27 | 95.0 | DDE superfamily endonuclease |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。