Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003238`

染色体: Chr02 坐标: 53651988-53659844 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003238`
名称	SmilChr02G003238
描述	protein NRT1/ PTR FAMILY 5.10-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	53651988 - 53659844 / `+`

ID 对照

NCBI Gene ID	`LOC131010221`
GeneID	`131010221`
locus_tag	`-`
NCBI Name	`LOC131010221`
原始查询	`SmilChr02G003238`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein NRT1/ PTR FAMILY 5.10-like
产物	protein NRT1/ PTR FAMILY 5.10-like
Arabidopsis	`AT1G22540` (AT1G22540) Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838860] identity=53.3; qcov=1.03; evalue=6.76e-180; confidence=high
Rice	`Os01g0871500` - identity=49.3; qcov=0.974; evalue=2.98e-162; confidence=high
GO	GO:0016020 (membrane); GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00854 (PTR2); PF07690 (MFS_1)
InterPro	-
eggNOG	-
NR	GeneID:131010221

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057793625.1`
2	Vacuole	液泡	0.20000	`XP_057793625.1`
3	Vacuole membrane	液泡膜	0.20000	`XP_057793625.1`
4	Nucleus	细胞核	0.00000	`XP_057793625.1`
5	Chromosome	染色体	0.00000	`XP_057793625.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:53652116`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr2:53652121`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,B53,C17
`Chr2:53652466`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B115,B17,B44,B59,C45
`Chr2:53652590`	`T`	`TTA`	2bp_insertion	frameshift_variant	1	B72
`Chr2:53652590`	`T`	`TTA`	2bp_insertion	CDS_variant	1	B72
`Chr2:53654007`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:53654039`	`T`	`TC`	1bp_insertion	frameshift_variant	7	A18,B118,B126,B34,B61,C17,C21
`Chr2:53654048`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr2:53654058`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr2:53654145`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B115,B17,B59,C45
`Chr2:53654202`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B13,B140,B53,C17
`Chr2:53654270`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793625.1

539 aa

270

539

MFS_1

PTR2

PF07690 MFS_1 52-479 aa PF00854 PTR2 106-493 aa

XP_057793626.1

508 aa

254

508

MFS_1

PTR2

PF07690 MFS_1 22-448 aa PF00854 PTR2 75-462 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793625.1`	Pfam	`PF07690`	MFS_1	Family	52	479	1.1e-11	45.0	Major Facilitator Superfamily
`XP_057793625.1`	Pfam	`PF00854`	PTR2	Family	106	493	8.1e-72	243.0	POT family
`XP_057793626.1`	Pfam	`PF07690`	MFS_1	Family	22	448	6.9e-12	45.7	Major Facilitator Superfamily
`XP_057793626.1`	Pfam	`PF00854`	PTR2	Family	75	462	6.4e-72	243.3	POT family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057937642.1
TGTGGAACCATAAAAAAAAAAATCTAGGCCCGCCAAGAAAGTGGTTTGCAACGGTCCTTACATTGAAATGGCTATAACCACCGCCGGAGAAGTAATGCCCGCAGCGCTGCTGAACGACGTCGTTCCTGGCTATGTCGACTACAACGGCCGCCCATCCATCCGCTCCAAATCCGGTTTATGGAAATCTGCTTCTTTCATCGCAGGTGCTGGAACGGCGGAGAGGTTTTGTTACTATGGAATTAGCTCGAATTTGGTGAGTT...

XM_057937643.1
GTGGAACCATAAAAAAAAAAATCTAGGCCCGCCAAGAAAGTGGTTTGCAACGGTCCTTACATTGAAATGGCTATAACCACCGCCGGAGAAGTAATGCCCGCAGCGCTGCTGAACGACGTCGTTCCTGGCTATGTCGACTACAACGGCCGCCCATCCATCCGCTCCAAATCCGGTTTATGGAAATCTGCTTCTTTCATCGCAGTGATTTTGTGTTACCAGGTGCTGGAACGGCGGAGAGGTTTTGTTACTATGGAATTAGC...

CDS

2 records

下载 CDS FASTA

LOC131010221
ATGGCTATAACCACCGCCGGAGAAGTAATGCCCGCAGCGCTGCTGAACGACGTCGTTCCTGGCTATGTCGACTACAACGGCCGCCCATCCATCCGCTCCAAATCCGGTTTATGGAAATCTGCTTCTTTCATCGCAGGTGCTGGAACGGCGGAGAGGTTTTGTTACTATGGAATTAGCTCGAATTTGGTGAGTTATTTAACCGGCGAATTAGGCCAATCCACGGCGGCTGCCGCCGCGAACTTGAATGCATGGAACGGCAC...

LOC131010221
ATGGAAATCTGCTTCTTTCATCGCAGTGATTTTGTGTTACCAGGTGCTGGAACGGCGGAGAGGTTTTGTTACTATGGAATTAGCTCGAATTTGGTGAGTTATTTAACCGGCGAATTAGGCCAATCCACGGCGGCTGCCGCCGCGAACTTGAATGCATGGAACGGCACGGCGGCGCTCTCGCCAATTCTCGGCGCCCTTCTGGCGGACTCGCTTTTGGGCCGGTTCAGAATGATTGTTTTCTCATCTATGCTTTATATATT...

Protein

2 records

下载 Protein FASTA

XP_057793625.1
MAITTAGEVMPAALLNDVVPGYVDYNGRPSIRSKSGLWKSASFIAGAGTAERFCYYGISSNLVSYLTGELGQSTAAAAANLNAWNGTAALSPILGALLADSLLGRFRMIVFSSMLYILGLCLLTLSSAIISLSSTSCKNNENNNDTSSCYPSEIQTIFFFCCWYVVAFAQGGHKPCLQAFGTDQFDVRDDEENAAKSSFFNWWFITTCLGGVLALSVVTYIQDNLSWVIGFGIPTVAMLFSLLLFCIGSLRYRFSTERKR...

XP_057793626.1
MEICFFHRSDFVLPGAGTAERFCYYGISSNLVSYLTGELGQSTAAAAANLNAWNGTAALSPILGALLADSLLGRFRMIVFSSMLYILGLCLLTLSSAIISLSSTSCKNNENNNDTSSCYPSEIQTIFFFCCWYVVAFAQGGHKPCLQAFGTDQFDVRDDEENAAKSSFFNWWFITTCLGGVLALSVVTYIQDNLSWVIGFGIPTVAMLFSLLLFCIGSLRYRFSTERKRKNQRHPFLRMFRVFVQKRKPSHLEVLLPVSE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器