Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003242`

染色体: Chr02 坐标: 53699702-53702986 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003242`
名称	SmilChr02G003242
描述	protein NRT1/ PTR FAMILY 5.10-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	53699702 - 53702986 / `+`

ID 对照

NCBI Gene ID	`LOC131010227`
GeneID	`131010227`
locus_tag	`-`
NCBI Name	`LOC131010227`
原始查询	`SmilChr02G003242`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein NRT1/ PTR FAMILY 5.10-like
产物	protein NRT1/ PTR FAMILY 5.10-like
Arabidopsis	`AT1G22540` (AT1G22540) Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838860] identity=55.3; qcov=1.06; evalue=0; confidence=high
Rice	`Os01g0871600` (OsPOT) - identity=46.7; qcov=1.01; evalue=3.18e-180; confidence=high
GO	GO:0016020 (membrane); GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00854 (PTR2); PF07690 (MFS_1)
InterPro	-
eggNOG	-
NR	GeneID:131010227

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057793633.1`
2	Vacuole	液泡	0.20000	`XP_057793633.1`
3	Vacuole membrane	液泡膜	0.20000	`XP_057793633.1`
4	Nucleus	细胞核	0.00000	`XP_057793633.1`
5	Chromosome	染色体	0.00000	`XP_057793633.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:53699946`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr2:53700025`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A7,C81
`Chr2:53700514`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr2:53700579`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B129,B91
`Chr2:53700600`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B50,C23,C57
`Chr2:53701510`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:53701574`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B41
`Chr2:53701574`	`GA`	`G`	1bp_deletion	CDS_variant	1	B41
`Chr2:53701629`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A10,B61,C58
`Chr2:53701655`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B10,B59,D8
`Chr2:53701750`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:53701760`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793633.1

560 aa

280

560

MFS_1

PTR2

PF07690 MFS_1 67-495 aa PF00854 PTR2 115-514 aa

XP_057793634.1

556 aa

278

556

MFS_1

PTR2

PF07690 MFS_1 67-491 aa PF00854 PTR2 115-510 aa

XP_057793635.1

531 aa

266

531

MFS_1

PTR2

PF07690 MFS_1 67-466 aa PF00854 PTR2 127-485 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793633.1`	Pfam	`PF07690`	MFS_1	Family	67	495	6.8e-14	52.3	Major Facilitator Superfamily
`XP_057793633.1`	Pfam	`PF00854`	PTR2	Family	115	514	4.4e-88	296.5	POT family
`XP_057793634.1`	Pfam	`PF07690`	MFS_1	Family	67	491	1.2e-13	51.5	Major Facilitator Superfamily
`XP_057793634.1`	Pfam	`PF00854`	PTR2	Family	115	510	1.6e-87	294.6	POT family
`XP_057793635.1`	Pfam	`PF07690`	MFS_1	Family	67	466	2e-11	44.1	Major Facilitator Superfamily
`XP_057793635.1`	Pfam	`PF00854`	PTR2	Family	127	485	1.3e-85	288.4	POT family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057937650.1
TAAGCCCTTTCTTTGGGTAAGAAAAGCATATATGACACCAGAATATTCTTAGCTAGTCTTGGATATATAAAAGCATTTTCAAAAATATCATGAAAAGACATGATTACTATTTGAATTTGTCGAGTTAATGCTCAAATCAATCTGAATTTTCAATACTAATTAATTTGGACCAAATTGGATGAGAGAGAGAGAGAGAGAGAGAGAGAATGGATATCGGAGTTGACAGTGGTGGCCTTTCCGAAGCGCAAACTCGGCTAGTA...

XM_057937651.1
TAAGCCCTTTCTTTGGGTAAGAAAAGCATATATGACACCAGAATATTCTTAGCTAGTCTTGGATATATAAAAGCATTTTCAAAAATATCATGAAAAGACATGATTACTATTTGAATTTGTCGAGTTAATGCTCAAATCAATCTGAATTTTCAATACTAATTAATTTGGACCAAATTGGATGAGAGAGAGAGAGAGAGAGAGAGAGAATGGATATCGGAGTTGACAGTGGTGGCCTTTCCGAAGCGCAAACTCGGCTAGTA...

CDS

3 records

下载 CDS FASTA

LOC131010227
ATGGATATCGGAGTTGACAGTGGTGGCCTTTCCGAAGCGCAAACTCGGCTAGTAGATGTAGATGTAGATGTAGATGATGTGGTGGCGGGCTTTGTCGATTTTAAAGGCCGCCCCGCCGTTCGATCCAAATCCGGATTATGGAAGTCCGCTTCTTTCATCATAGGCGTGGAAGTGGCGGAGAAATTTGCATGTAACGGAATAAGTTCAAATCTCATCACCTATCTGACGGGGCCGTTAGGACAATCGACGGCGTCTGCGGC...

Protein

3 records

下载 Protein FASTA

XP_057793633.1
MDIGVDSGGLSEAQTRLVDVDVDVDDVVAGFVDFKGRPAVRSKSGLWKSASFIIGVEVAEKFACNGISSNLITYLTGPLGQSTASAAANVNAWNGAAALLPLLGAFVADSFLGRYRTIIISVVVYILSLGFLSLSASLHYECKAEANTSECSPPLQELVFFYLSLYLAAFAEGGMRPCIQAFGADQFDGDDINESKSKSSFFNWWYFAMNAGALLALLILNYIQDNLSWELGFGIPCFVMILALLLYLLGSFTYRFRLHT...

XP_057793634.1
MDIGVDSGGLSEAQTRLVDVDVDVDDVVAGFVDFKGRPAVRSKSGLWKSASFIIGVEVAEKFACNGISSNLITYLTGPLGQSTASAAANVNAWNGAAALLPLLGAFVADSFLGRYRTIIISVVVYILSLGFLSLSASLHYECKAEANTSECSPPLQELVFFYLSLYLAAFAEGGMRPCIQAFGADQFDGDDINESKSKSSFFNWWYFAMNAGALLALLILNYIQDNLSWELGFGIPCFVMILALLLYLLGSFTYRFRLHT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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