Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003269

染色体: Chr02 坐标: 53943472-53945305 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003269
名称SmilChr02G003269
描述immune-associated nucleotide-binding protein 9-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向53943472 - 53945305 / +

ID 对照

NCBI Gene IDLOC131010254
GeneID131010254
locus_tag-
NCBI NameLOC131010254
原始查询SmilChr02G003269

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述immune-associated nucleotide-binding protein 9-like
产物immune-associated nucleotide-binding protein 9-like
ArabidopsisAT1G33970 (AT1G33970)
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840294]
identity=44.7; qcov=0.915; evalue=9.59e-83; confidence=medium
RiceOs02g0557100
-
identity=40.1; qcov=0.933; evalue=1.66e-69; confidence=medium
GOGO:0005525 (GTP binding)
KEGG-
PfamPF01926 (MMR_HSR1); PF04548 (AIG1)
InterPro-
eggNOG-
NRGeneID:131010254

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Lipid droplet 脂滴 0.80000 XP_057793672.1
2 Endoplasmic reticulum 内质网 0.40000 XP_057793672.1
3 Cytoplasm 细胞质 0.20000 XP_057793672.1
4 Cytoplasmic vesicle 细胞质囊泡 0.20000 XP_057793672.1
5 Cytosol 细胞质基质 0.20000 XP_057793672.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:53943591 G A EMS_canonical_SNV CDS_variant 2 B72,C74
Chr2:53943735 CAT C 2bp_deletion frameshift_variant 2 A21,B35
Chr2:53943735 CAT C 2bp_deletion CDS_variant 2 A21,B35
Chr2:53943740 C T EMS_canonical_SNV stop_gained 2 A21,B35
Chr2:53943740 C T EMS_canonical_SNV CDS_variant 2 A21,B35
Chr2:53943939 G A EMS_canonical_SNV CDS_variant 3 A11,B87,C50
Chr2:53943956 G A EMS_canonical_SNV CDS_variant 3 A10,B61,C58
Chr2:53943998 A AAG 2bp_insertion frameshift_variant 7 B111,B129,B31,B42,B43,B67,B91
Chr2:53944004 C T EMS_canonical_SNV CDS_variant 4 A23,B51,C85,D10
Chr2:53944010 C T EMS_canonical_SNV CDS_variant 1 B50
Chr2:53944032 C T EMS_canonical_SNV CDS_variant 1 D11
Chr2:53944112 ATT A 2bp_deletion frameshift_variant 15 A9,B105,B108,B42,B43,B50,B55,B70,C23,C28,C57,C7,C75,D1,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057793672.1
342 aa
N
1
171
342
AIG1
MMR_HSR1
C
PF04548 AIG1 14-221 aa PF01926 MMR_HSR1 15-105 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057793672.1 Pfam PF04548 AIG1 Domain 14 221 1.2e-72 244.4 AIG1 family
XP_057793672.1 Pfam PF01926 MMR_HSR1 Family 15 105 1.9e-07 31.9 50S ribosome-binding GTPase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057937689.1
GCTAAAGTGCTAAACCCAAATCCCCCGCACATTTTACAACTCATAATCATCTCTCTACAAGTTCCGACTTCATCCATCAGCTTCTGAATTCCTTTCCCTCCCAACTATTCACACAATGCGTTTCACATCGTGTTGCGGAGGTGCCGGCGCTAAAACCCTAGTTTTAGTCGGAAAAGCAGGCAACGGGAAAAGCGCAACCGGCAACACCATCATCGGCCGCCGGGTGTTCGAATCAAAGCGCAGCTTAGCCGGCGTTACCT...

CDS

1 records

下载 CDS FASTA
LOC131010254
ATGCGTTTCACATCGTGTTGCGGAGGTGCCGGCGCTAAAACCCTAGTTTTAGTCGGAAAAGCAGGCAACGGGAAAAGCGCAACCGGCAACACCATCATCGGCCGCCGGGTGTTCGAATCAAAGCGCAGCTTAGCCGGCGTTACCTCCACATGCCAGCTGGAGACCGCTACGTTAAGCAACGGACAAATTATCAATGTCATCGACACCCCAGGGCTATTTGATTCTTCTGTCGAGCCTCGTCTGTTGGCTACAGAGATTGC...

Protein

1 records

下载 Protein FASTA
XP_057793672.1
MRFTSCCGGAGAKTLVLVGKAGNGKSATGNTIIGRRVFESKRSLAGVTSTCQLETATLSNGQIINVIDTPGLFDSSVEPRLLATEIAQCIKMAKDGIHGVLLVLSIGNRFSEEEASAFASLCQIFGHEIADYMIVVFAHGDLLEDNQCLEDFWGPNCPQLLTDIMAMCGKRAVVFDNMTKDEDKISRQRKELLSLVEAVVKNNGGKSYVNYLFEALNMSEMDLIDQTSEVTCSEKSHEGKKFHIKYEEQFEQLIKMVELR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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