当前解析结果
SmilChr02G003269| 统一新 Gene ID | SmilChr02G003269 |
|---|---|
| 名称 | SmilChr02G003269 |
| 描述 | immune-associated nucleotide-binding protein 9-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 53943472 - 53945305 / + |
| NCBI Gene ID | LOC131010254 |
|---|---|
| GeneID | 131010254 |
| locus_tag | - |
| NCBI Name | LOC131010254 |
| 原始查询 | SmilChr02G003269 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | immune-associated nucleotide-binding protein 9-like |
| 产物 | immune-associated nucleotide-binding protein 9-like |
| Arabidopsis | AT1G33970 (AT1G33970)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840294] identity=44.7; qcov=0.915; evalue=9.59e-83; confidence=medium |
| Rice | Os02g0557100- identity=40.1; qcov=0.933; evalue=1.66e-69; confidence=medium |
| GO | GO:0005525 (GTP binding) |
| KEGG | - |
| Pfam | PF01926 (MMR_HSR1); PF04548 (AIG1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010254 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Lipid droplet | 脂滴 | 0.80000 | XP_057793672.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057793672.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057793672.1 |
| 4 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057793672.1 |
| 5 | Cytosol | 细胞质基质 | 0.20000 | XP_057793672.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:53943591 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B72,C74 |
Chr2:53943735 |
CAT |
C |
2bp_deletion | frameshift_variant | 2 | A21,B35 |
Chr2:53943735 |
CAT |
C |
2bp_deletion | CDS_variant | 2 | A21,B35 |
Chr2:53943740 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | A21,B35 |
Chr2:53943740 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B35 |
Chr2:53943939 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,B87,C50 |
Chr2:53943956 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,B61,C58 |
Chr2:53943998 |
A |
AAG |
2bp_insertion | frameshift_variant | 7 | B111,B129,B31,B42,B43,B67,B91 |
Chr2:53944004 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A23,B51,C85,D10 |
Chr2:53944010 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr2:53944032 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:53944112 |
ATT |
A |
2bp_deletion | frameshift_variant | 15 | A9,B105,B108,B42,B43,B50,B55,B70,C23,C28,C57,C7,C75,D1,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057793672.1PF04548
AIG1 14-221 aa
PF01926
MMR_HSR1 15-105 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793672.1 |
Pfam | PF04548 |
AIG1 | Domain | 14 | 221 | 1.2e-72 | 244.4 | AIG1 family |
XP_057793672.1 |
Pfam | PF01926 |
MMR_HSR1 | Family | 15 | 105 | 1.9e-07 | 31.9 | 50S ribosome-binding GTPase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。