Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003275`

染色体: Chr02 坐标: 54022625-54027014 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003275`
名称	SmilChr02G003275
描述	elongation factor 1-gamma-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	54022625 - 54027014 / `+`

ID 对照

NCBI Gene ID	`LOC131010260`
GeneID	`131010260`
locus_tag	`-`
NCBI Name	`LOC131010260`
原始查询	`SmilChr02G003275`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	elongation factor 1-gamma-like
产物	elongation factor 1-gamma-like
Arabidopsis	`AT1G09640` (AT1G09640) Translation elongation factor EF1B, gamma chain [Source:NCBI gene (formerly Entrezgene);Acc:837491] identity=74.1; qcov=1; evalue=0; confidence=high
Rice	`Os02g0220500` - identity=74.3; qcov=1.04; evalue=0; confidence=high
GO	GO:0003746 (translation elongation factor activity); GO:0004364 (glutathione transferase activity); GO:0006414 (translational elongation)
KEGG	-
Pfam	PF00043 (GST_C); PF00647 (EF1G); PF02798 (GST_N); PF13409 (GST_N_2); PF13417 (GST_N_3)
InterPro	-
eggNOG	-
NR	GeneID:131010260

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057793682.1`
2	Cytoplasm	细胞质	0.60000	`XP_057793682.1`
3	Nucleus	细胞核	0.00000	`XP_057793682.1`
4	Chromosome	染色体	0.00000	`XP_057793682.1`
5	Centromere	着丝粒	0.00000	`XP_057793682.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:54025138`	`CTT`	`C`	2bp_deletion	frameshift_variant	15	A23,B113,B114,B119,B13,B17,B33,B37,B44,B68,C39,C40,C70,C74,D9
`Chr2:54025144`	`GT`	`G`	1bp_deletion	frameshift_variant	13	A23,B113,B114,B119,B13,B17,B33,B37,B44,B68,C39,C40,C70
`Chr2:54025147`	`TG`	`T`	1bp_deletion	frameshift_variant	14	A23,B113,B114,B119,B13,B17,B33,B37,B44,B68,C39,C40,C6,C70
`Chr2:54025152`	`G`	`GAA`	2bp_insertion	frameshift_variant	14	A23,B113,B119,B13,B17,B33,B37,B44,B68,C39,C40,C6,C64,C70
`Chr2:54025213`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr2:54025348`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:54025390`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B72,C74
`Chr2:54025469`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B61,C53,C58
`Chr2:54025472`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr2:54025483`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A16,A21
`Chr2:54025819`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B106,B73
`Chr2:54025836`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B14,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793682.1

416 aa

208

416

GST_N

GST_N_3

GST_N_2

GST_C

EF1G

PF02798 GST_N 11-75 aa PF13417 GST_N_3 11-78 aa PF13409 GST_N_2 13-75 aa PF00043 GST_C 127-196 aa PF00647 EF1G 255-363 aa

XP_057793683.1

416 aa

208

416

GST_N

GST_N_3

GST_N_2

GST_C

EF1G

PF02798 GST_N 11-75 aa PF13417 GST_N_3 11-78 aa PF13409 GST_N_2 13-75 aa PF00043 GST_C 127-196 aa PF00647 EF1G 255-363 aa

XP_057793684.1

416 aa

208

416

GST_N

GST_N_3

GST_N_2

GST_C

EF1G

PF02798 GST_N 11-75 aa PF13417 GST_N_3 11-78 aa PF13409 GST_N_2 13-75 aa PF00043 GST_C 127-196 aa PF00647 EF1G 255-363 aa

XP_057793685.1

416 aa

208

416

GST_N

GST_N_3

GST_N_2

GST_C

EF1G

PF02798 GST_N 11-75 aa PF13417 GST_N_3 11-78 aa PF13409 GST_N_2 13-75 aa PF00043 GST_C 127-196 aa PF00647 EF1G 255-363 aa

XP_057793686.1

416 aa

208

416

GST_N

GST_N_3

GST_N_2

GST_C

EF1G

PF02798 GST_N 11-75 aa PF13417 GST_N_3 11-78 aa PF13409 GST_N_2 13-75 aa PF00043 GST_C 127-196 aa PF00647 EF1G 255-363 aa

XP_057793687.1

382 aa

191

382

GST_N

GST_N_2

GST_N_3

GST_C

EF1G

PF02798 GST_N 5-41 aa PF13409 GST_N_2 5-41 aa PF13417 GST_N_3 6-44 aa PF00043 GST_C 93-162 aa PF00647 EF1G 221-329 aa

XP_057793688.1

382 aa

191

382

GST_N

GST_N_2

GST_N_3

GST_C

EF1G

PF02798 GST_N 5-41 aa PF13409 GST_N_2 5-41 aa PF13417 GST_N_3 6-44 aa PF00043 GST_C 93-162 aa PF00647 EF1G 221-329 aa

XP_057793689.1

382 aa

191

382

GST_N

GST_N_2

GST_N_3

GST_C

EF1G

PF02798 GST_N 5-41 aa PF13409 GST_N_2 5-41 aa PF13417 GST_N_3 6-44 aa PF00043 GST_C 93-162 aa PF00647 EF1G 221-329 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793682.1`	Pfam	`PF02798`	GST_N	Domain	11	75	1.2e-13	51.8	Glutathione S-transferase, N-terminal domain
`XP_057793682.1`	Pfam	`PF13417`	GST_N_3	Domain	11	78	1.2e-07	32.6	Glutathione S-transferase, N-terminal domain
`XP_057793682.1`	Pfam	`PF13409`	GST_N_2	Domain	13	75	1.7e-08	35.6	Glutathione S-transferase, N-terminal domain
`XP_057793682.1`	Pfam	`PF00043`	GST_C	Domain	127	196	5.9e-10	40.0	Glutathione S-transferase, C-terminal domain
`XP_057793682.1`	Pfam	`PF00647`	EF1G	Domain	255	363	9.4e-44	148.4	Elongation factor 1 gamma, conserved domain
`XP_057793683.1`	Pfam	`PF02798`	GST_N	Domain	11	75	1.2e-13	51.8	Glutathione S-transferase, N-terminal domain
`XP_057793683.1`	Pfam	`PF13417`	GST_N_3	Domain	11	78	1.2e-07	32.6	Glutathione S-transferase, N-terminal domain
`XP_057793683.1`	Pfam	`PF13409`	GST_N_2	Domain	13	75	1.7e-08	35.6	Glutathione S-transferase, N-terminal domain
`XP_057793683.1`	Pfam	`PF00043`	GST_C	Domain	127	196	5.9e-10	40.0	Glutathione S-transferase, C-terminal domain
`XP_057793683.1`	Pfam	`PF00647`	EF1G	Domain	255	363	9.4e-44	148.4	Elongation factor 1 gamma, conserved domain
`XP_057793684.1`	Pfam	`PF02798`	GST_N	Domain	11	75	1.2e-13	51.8	Glutathione S-transferase, N-terminal domain
`XP_057793684.1`	Pfam	`PF13417`	GST_N_3	Domain	11	78	1.2e-07	32.6	Glutathione S-transferase, N-terminal domain
`XP_057793684.1`	Pfam	`PF13409`	GST_N_2	Domain	13	75	1.7e-08	35.6	Glutathione S-transferase, N-terminal domain
`XP_057793684.1`	Pfam	`PF00043`	GST_C	Domain	127	196	5.9e-10	40.0	Glutathione S-transferase, C-terminal domain
`XP_057793684.1`	Pfam	`PF00647`	EF1G	Domain	255	363	9.4e-44	148.4	Elongation factor 1 gamma, conserved domain
`XP_057793685.1`	Pfam	`PF02798`	GST_N	Domain	11	75	1.2e-13	51.8	Glutathione S-transferase, N-terminal domain
`XP_057793685.1`	Pfam	`PF13417`	GST_N_3	Domain	11	78	1.2e-07	32.6	Glutathione S-transferase, N-terminal domain
`XP_057793685.1`	Pfam	`PF13409`	GST_N_2	Domain	13	75	1.7e-08	35.6	Glutathione S-transferase, N-terminal domain
`XP_057793685.1`	Pfam	`PF00043`	GST_C	Domain	127	196	5.9e-10	40.0	Glutathione S-transferase, C-terminal domain
`XP_057793685.1`	Pfam	`PF00647`	EF1G	Domain	255	363	9.4e-44	148.4	Elongation factor 1 gamma, conserved domain
`XP_057793686.1`	Pfam	`PF02798`	GST_N	Domain	11	75	1.2e-13	51.8	Glutathione S-transferase, N-terminal domain
`XP_057793686.1`	Pfam	`PF13417`	GST_N_3	Domain	11	78	1.2e-07	32.6	Glutathione S-transferase, N-terminal domain
`XP_057793686.1`	Pfam	`PF13409`	GST_N_2	Domain	13	75	1.7e-08	35.6	Glutathione S-transferase, N-terminal domain
`XP_057793686.1`	Pfam	`PF00043`	GST_C	Domain	127	196	5.9e-10	40.0	Glutathione S-transferase, C-terminal domain
`XP_057793686.1`	Pfam	`PF00647`	EF1G	Domain	255	363	9.4e-44	148.4	Elongation factor 1 gamma, conserved domain
`XP_057793687.1`	Pfam	`PF02798`	GST_N	Domain	5	41	4.3e-11	43.7	Glutathione S-transferase, N-terminal domain
`XP_057793687.1`	Pfam	`PF13409`	GST_N_2	Domain	5	41	1.5e-06	29.5	Glutathione S-transferase, N-terminal domain
`XP_057793687.1`	Pfam	`PF13417`	GST_N_3	Domain	6	44	4.3e-05	24.5	Glutathione S-transferase, N-terminal domain
`XP_057793687.1`	Pfam	`PF00043`	GST_C	Domain	93	162	4.3e-10	40.4	Glutathione S-transferase, C-terminal domain
`XP_057793687.1`	Pfam	`PF00647`	EF1G	Domain	221	329	7.2e-44	148.7	Elongation factor 1 gamma, conserved domain
`XP_057793688.1`	Pfam	`PF02798`	GST_N	Domain	5	41	4.3e-11	43.7	Glutathione S-transferase, N-terminal domain
`XP_057793688.1`	Pfam	`PF13409`	GST_N_2	Domain	5	41	1.5e-06	29.5	Glutathione S-transferase, N-terminal domain
`XP_057793688.1`	Pfam	`PF13417`	GST_N_3	Domain	6	44	4.3e-05	24.5	Glutathione S-transferase, N-terminal domain
`XP_057793688.1`	Pfam	`PF00043`	GST_C	Domain	93	162	4.3e-10	40.4	Glutathione S-transferase, C-terminal domain
`XP_057793688.1`	Pfam	`PF00647`	EF1G	Domain	221	329	7.2e-44	148.7	Elongation factor 1 gamma, conserved domain
`XP_057793689.1`	Pfam	`PF02798`	GST_N	Domain	5	41	4.3e-11	43.7	Glutathione S-transferase, N-terminal domain
`XP_057793689.1`	Pfam	`PF13409`	GST_N_2	Domain	5	41	1.5e-06	29.5	Glutathione S-transferase, N-terminal domain
`XP_057793689.1`	Pfam	`PF13417`	GST_N_3	Domain	6	44	4.3e-05	24.5	Glutathione S-transferase, N-terminal domain
`XP_057793689.1`	Pfam	`PF00043`	GST_C	Domain	93	162	4.3e-10	40.4	Glutathione S-transferase, C-terminal domain
`XP_057793689.1`	Pfam	`PF00647`	EF1G	Domain	221	329	7.2e-44	148.7	Elongation factor 1 gamma, conserved domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057937699.1
ATTAATACATCCAATAGAACACCACCTATATAGATTGAAATAGTGTCGCGGATTCGAGGTAGATTGCTGCGGTCAACATGGAATCAGCTGACTCCCATAATTAATTACACTGATAAATATTTGAAAATCTGTTGCATTTTCAACCTCTATAAATAGAGAATCAAATTCAGTTGATGGGCACTTCGACATCCACGATTGCATTTTCAGTTCTTTCCGATTTCAAAGAGACAAGGCCACCATTCTTGATCTGCAAAACCATA...

XM_057937700.1
ATCCAATAGAACACCACCTATATAGATTGAAATAGTGTCGCGGATTCGAGGTAGATTGCTGCGGTCAACATGGAATCAGCTGACTCCCATAATTAATTACACTGATAAATATTTGAAAATCTGTTGCATTTTCAACCTCTATAAATAGAGAATCAAATTCAGTTGATGGGCACTTCGACATCCACGATTGCATTTTCAGTTCTTTCCGATTTCAAAGAGACAAGGCCACCATTCTTGATCTGCAAAACCATAGGAAGCTC...

CDS

8 records

下载 CDS FASTA

LOC131010260
ATGGCTCTGGTTTTGCATTCTACTTTAAACAGGAATGCAAAAAAGATACTTATTGTGTGTGAGTTCAATGGTGTAAAGGTCGAACTAGTTAAGGATTTTGAGATGGGTGTATCAAATAAGACCCCAGAATTTATCAAGATGAATCCCATCGGAAAGATTCCTGTGCTCGAAACGCCTGATGGCCCGATATTTGAGAGCAATGCTATTGCACGCTACGTGGCTCGGTTAAGTTCCGATAACAACCTATTTGGCTCTTCCCC...

Protein

8 records

下载 Protein FASTA

XP_057793682.1
MALVLHSTLNRNAKKILIVCEFNGVKVELVKDFEMGVSNKTPEFIKMNPIGKIPVLETPDGPIFESNAIARYVARLSSDNNLFGSSPYEYGQVEQWIDFSTNEIDAHLACWLYPRLGIRAHLPPVEEAAIASLKRGLAALNTHLASHTYLVGHGVTLADIITVCILFNGFKVILIKSFTAEFPHVERYFWTLLNQPNFKKVLGDIQQAESVPPVPTKKHAQLKEVAKPKPKEEPKKEAKKEEHKAVEEEEAPKPKAKNPL...

XP_057793683.1
MALVLHSTLNRNAKKILIVCEFNGVKVELVKDFEMGVSNKTPEFIKMNPIGKIPVLETPDGPIFESNAIARYVARLSSDNNLFGSSPYEYGQVEQWIDFSTNEIDAHLACWLYPRLGIRAHLPPVEEAAIASLKRGLAALNTHLASHTYLVGHGVTLADIITVCILFNGFKVILIKSFTAEFPHVERYFWTLLNQPNFKKVLGDIQQAESVPPVPTKKHAQLKEVAKPKPKEEPKKEAKKEEHKAVEEEEAPKPKAKNPL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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