Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003276`

染色体: Chr02 坐标: 54033857-54037471 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003276`
名称	SmilChr02G003276
描述	12-oxophytodienoate reductase 2-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	54033857 - 54037471 / `+`

ID 对照

NCBI Gene ID	`LOC131010261`
GeneID	`131010261`
locus_tag	`-`
NCBI Name	`LOC131010261`
原始查询	`SmilChr02G003276`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	12-oxophytodienoate reductase 2-like
产物	12-oxophytodienoate reductase 2-like
Arabidopsis	`AT1G76690` (OPR2) 12-oxophytodienoate reductase 2 [Source:NCBI gene (formerly Entrezgene);Acc:844002] identity=65.9; qcov=0.923; evalue=0; confidence=high
Rice	`Os06g0215600` (OsOPR5) - identity=67.8; qcov=0.768; evalue=0; confidence=high
GO	GO:0010181 (FMN binding); GO:0016491 (oxidoreductase activity)
KEGG	smil00592 (alpha-Linolenic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00724 (Oxidored_FMN)
InterPro	-
eggNOG	-
NR	GeneID:131010261

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057793690.1`
2	Cytosol	细胞质基质	0.80000	`XP_057793692.1`
3	Peroxisome	过氧化物酶体	0.60000	`XP_057793692.1`
4	Nucleus	细胞核	0.00000	`XP_057793691.1`
5	Chromosome	染色体	0.00000	`XP_057793691.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:54034071`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A22,B127,B23
`Chr2:54035014`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B29
`Chr2:54035031`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A11,B87,C46,C50,D3
`Chr2:54035070`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A11,B11,B87,C50,C55
`Chr2:54035391`	`CT`	`C`	1bp_deletion	frameshift_variant	8	A5,B124,B2,B27,C25,C34,D11,D9
`Chr2:54035394`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr2:54035396`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A11,B107,B29
`Chr2:54035398`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C2,C32,C68
`Chr2:54035405`	`C`	`CT`	1bp_insertion	frameshift_variant	2	B34,B59
`Chr2:54035405`	`C`	`CT`	1bp_insertion	CDS_variant	2	B34,B59
`Chr2:54035423`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C81,D11
`Chr2:54035453`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793690.1

404 aa

202

404

Oxidored_FMN

PF00724 Oxidored_FMN 44-377 aa

XP_057793691.1

352 aa

176

352

Oxidored_FMN

PF00724 Oxidored_FMN 7-325 aa

XP_057793692.1

457 aa

228

457

Oxidored_FMN

PF00724 Oxidored_FMN 110-430 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793690.1`	Pfam	`PF00724`	Oxidored_FMN	Domain	44	377	1.6e-86	291.4	NADH:flavin oxidoreductase / NADH oxidase family
`XP_057793691.1`	Pfam	`PF00724`	Oxidored_FMN	Domain	7	325	1.2e-80	272.1	NADH:flavin oxidoreductase / NADH oxidase family
`XP_057793692.1`	Pfam	`PF00724`	Oxidored_FMN	Domain	110	430	5.2e-81	273.3	NADH:flavin oxidoreductase / NADH oxidase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057937707.1
CTTCAAATAACAGCCACAAATTACTATCATACGAAGCAGCCCCCAGAGTGAGTATACTAACATGTATAGCTTCGGCGAATTCAATGTAGATTGCTGCCGTCAGCATCGAATCAGCAGACTCCCATGACTAATTACATTGTCATATTTTCTCCAAAATCTTTACGTTTTCAACCTCCATAAATACAGAATCAAATGCAGTTGATGGGCACTTCGACATCCACGACTTCATTTTCGATTCTTTTCAATTCTCAAAGAGAGAG...

XM_057937709.1
ATAGCTTCGGCGAATTCAATGTAGATTGCTGCCGTCAGCATCGAATCAGCAGACTCCCATGACTAATTACATTGTCATATTTTCTCCAAAATCTTTACGTTTTCAACCTCCATAAATACAGAATCAAATGCAGTTGATGGGCACTTCGACATCCACGACTTCATTTTCGATTCTTTTCAATTCTCAAAGAGAGAGTCCGCCATTATTGATCTGCAAAAACATGGGAAGCACAGCTGAAGATAAGCCGCAAATCCCACTTC...

CDS

3 records

下载 CDS FASTA

LOC131010261
ATGCAGTTGATGGGCACTTCGACATCCACGACTTCATTTTCGATTCTTTTCAATTCTCAAAGAGAGAGTCCGCCATTATTGATCTGCAAAAACATGGGAAGCACAGCTGAAGATAAGCCGCAAATCCCACTTCTCACACCATACAAAATGGGAAAATTTCAGCTCTCTCATAGGCGAAAAGTCGTCTCAAGATCAGGCCCGGGCTCTGTTGAGTTCTTTCATATCATGAGATTCATGGCTAATGCAGCTTTGGAGGTGCT...

LOC131010261
ATGCAGTTGATGGGCACTTCGACATCCACGACTTCATTTTCGATTCTTTTCAATTCTCAAAGAGAGAGTCCGCCATTATTGATCTGCAAAAACATGGGAAGCACAGCTGAAGATAAGCCGCAAATCCCACTTCTCACACCATACAAAATGGGAAAATTTCAGCTCTCTCATAGAATTGTTCTGGCGCCACTTACGAGGCAGAGGTCATTCAACAATGTACCTCAGCCCCATGCTGTATTGTATTACTCTCAGAGAGCCAA...

Protein

3 records

下载 Protein FASTA

XP_057793690.1
MQLMGTSTSTTSFSILFNSQRESPPLLICKNMGSTAEDKPQIPLLTPYKMGKFQLSHRIVLAPLTRQRSFNNVPQPHAVLYYSQRANKGGFLVSEATGVSDTAQGYPHTPGIWTKEQVEAWKPIVDAVHAKGAVFFCQIWHVGRVSNTGFQPNGQAPISSTDKELTPQIRANGVDVAQFSPPRRLTTEEIPQIVNDFRLAARNAMEAGFDGIEVHGAHGYLIDQFLKDNVNDRTDQYGGSLVNRCRFAREIIEAVTAEIG...

XP_057793691.1
MKAIIGIVLAPLTRQRSFNNVPQPHAVLYYSQRANKGGFLVSEATGVSDTAQGYPHTPGIWTKEQVEAWKPIVDAVHAKGAVFFCQIWHVGRVSNTGFQPNGQAPISSTDKELTPQIRANGVDVAQFSPPRRLTTEEIPQIVNDFRLAARNAMEAGFDGIEVHGAHGYLIDQFLKDNVNDRTDQYGGSLVNRCRFAREIIEAVTAEIGADRVGIRLSPFANYMESGDSNPNALGLYLAETLSRYELLYCHMVEPRMKTVG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器