Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003284`

染色体: Chr02 坐标: 54140444-54143191 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003284`
名称	SmilChr02G003284
描述	GDSL esterase/lipase At1g33811
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	54140444 - 54143191 / `-`

ID 对照

NCBI Gene ID	`LOC131010265`
GeneID	`131010265`
locus_tag	`-`
NCBI Name	`LOC131010265`
原始查询	`SmilChr02G003284`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GDSL esterase/lipase At1g33811
产物	GDSL esterase/lipase At1g33811
Arabidopsis	`AT1G33811` (AT1G33811) GDSL-like Lipase/Acylhydrolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840274] identity=59.8; qcov=0.608; evalue=4.55e-71; confidence=high
Rice	`Os05g0518300` (OsGELP73) - identity=49.1; qcov=0.556; evalue=3.16e-50; confidence=medium
GO	GO:0016788 (hydrolase activity, acting on ester bonds)
KEGG	-
Pfam	PF00657 (Lipase_GDSL)
InterPro	-
eggNOG	-
NR	GeneID:131010265

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057793696.1`
2	Cell wall	细胞壁	0.20000	`XP_057793696.1`
3	Nucleus	细胞核	0.00000	`XP_057793697.1`
4	Chromosome	染色体	0.00000	`XP_057793697.1`
5	Centromere	着丝粒	0.00000	`XP_057793697.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:54141104`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr2:54141148`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,B122,B82,C60
`Chr2:54141981`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr2:54142028`	`AT`	`A`	1bp_deletion	frameshift_variant	23	A1,A18,A19,B122,B20,B21,B25,B40,B44,B56,B95,B96,C14,C28,C41,C47,C5,C6,C78,C79,C8,C83,C85
`Chr2:54142032`	`G`	`GA`	1bp_insertion	frameshift_variant	23	A1,A18,A19,B122,B20,B21,B25,B40,B44,B56,B95,B96,C14,C28,C41,C47,C5,C6,C78,C79,C8,C83,C85
`Chr2:54142095`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B112,B118,B64,B98,C40
`Chr2:54142107`	`G`	`GGC`	2bp_insertion	frameshift_variant	67	A10,A13,A15,A16,A21,A3,A5,A6,A8,B103,B105,B108,B110,B112,B114,B118,B120,B121,B123,B126,B129,B13,B137,B139,B15,B17,B23,B26,B33,B34,B38,B4,B45,B49,B51,B52,B54,B58,B60,B64,B65,B74,B75,B8,B91,B94,B98,C13,C18,C21,C25,C27,C34,C40,C43,C45,C54,C57,C62,C74,C75,C85,C87,D3,D5,D6,D9
`Chr2:54142108`	`CAT`	`C`	2bp_deletion	frameshift_variant	64	A13,A15,A16,A21,A3,A5,A6,A8,B103,B105,B108,B110,B112,B114,B118,B120,B121,B123,B126,B129,B13,B137,B15,B17,B23,B26,B33,B34,B38,B4,B45,B49,B51,B52,B54,B58,B60,B64,B65,B74,B75,B8,B91,B94,B98,C13,C18,C21,C25,C34,C40,C43,C45,C54,C57,C62,C74,C75,C85,C87,D3,D5,D6,D9
`Chr2:54142124`	`CG`	`C`	1bp_deletion	frameshift_variant	7	B112,B120,B60,B64,B74,B98,C45
`Chr2:54142130`	`G`	`GC`	1bp_insertion	frameshift_variant	33	A21,A3,A5,A6,A8,B112,B120,B129,B13,B15,B17,B26,B33,B45,B52,B58,B60,B64,B65,B74,B8,B94,B98,C13,C18,C21,C43,C45,C74,C75,C83,C85,C87
`Chr2:54142132`	`CT`	`C`	1bp_deletion	frameshift_variant	32	A21,A3,A5,A6,A8,B112,B120,B129,B13,B15,B17,B26,B33,B45,B52,B58,B60,B64,B65,B74,B8,B98,C13,C18,C21,C43,C45,C74,C75,C83,C85,C87
`Chr2:54142215`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B72,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793696.1

368 aa

184

368

Lipase_GDSL

PF00657 Lipase_GDSL 36-347 aa

XP_057793697.1

286 aa

143

286

Lipase_GDSL

PF00657 Lipase_GDSL 36-120 aa PF00657 Lipase_GDSL 126-265 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793696.1`	Pfam	`PF00657`	Lipase_GDSL	Family	36	347	3.3e-37	129.4	GDSL-like Lipase/Acylhydrolase
`XP_057793697.1`	Pfam	`PF00657`	Lipase_GDSL	Family	36	120	1e-25	91.8	GDSL-like Lipase/Acylhydrolase
`XP_057793697.1`	Pfam	`PF00657`	Lipase_GDSL	Family	126	265	1e-25	91.8	GDSL-like Lipase/Acylhydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057937714.1
GGATTCCAACTTCTCTCGAACCCAACATGCCAAGAATCTCAATATAAATAAACACAAAAAAAATCACTAAGAATACAACCAAAACCTCAAATCTTACATTGCAAATGGCTATTCACCAACAATATTATTTGTGGGCTATGCTTCTTTCCTTGTATTTAGCAGCTGCCGAGGCTTGCAACAACAATGGCTGCTCACAAGTACCAGGTTTCTTCATATTTGGAGATTCCTTAGTTGACAATGGCAATAACAATGACATGTTG...

XM_057937713.1
GGATTCCAACTTCTCTCGAACCCAACATGCCAAGAATCTCAATATAAATAAACACAAAAAAAATCACTAAGAATACAACCAAAACCTCAAATCTTACATTGCAAATGGCTATTCACCAACAATATTATTTGTGGGCTATGCTTCTTTCCTTGTATTTAGCAGCTGCCGAGGCTTGCAACAACAATGGCTGCTCACAAGTACCAGGTTTCTTCATATTTGGAGATTCCTTAGTTGACAATGGCAATAACAATGACATGTTG...

CDS

2 records

下载 CDS FASTA

LOC131010265
ATGGCTATTCACCAACAATATTATTTGTGGGCTATGCTTCTTTCCTTGTATTTAGCAGCTGCCGAGGCTTGCAACAACAATGGCTGCTCACAAGTACCAGGTTTCTTCATATTTGGAGATTCCTTAGTTGACAATGGCAATAACAATGACATGTTGACTCTTGCTAGGGCTGACTACAGCCCTTACGGCGTTGATTTTCCCAACGGTGCCACGGGGCGTTTCACCAACGGCCGTACCTTTGTCGACGTGTTAGCTCAGTT...

Protein

2 records

下载 Protein FASTA

XP_057793696.1
MAIHQQYYLWAMLLSLYLAAAEACNNNGCSQVPGFFIFGDSLVDNGNNNDMLTLARADYSPYGVDFPNGATGRFTNGRTFVDVLAQLLGFPNYIPPYAEARGRALLQGANYASGASGIRDETGNNLGDHASMNQQVMSFAKTVQQLRRYFNNANSLCDYLSKCIFYAGLGSNDYLNNYFMRDYYSTADEYTPSAFAASLLHDYTNQLTELYNLGARKVVVAGVGPIGCIPYQLARFDGKGSRCNDEINSAISLFNAGLRR...

XP_057793697.1
MAIHQQYYLWAMLLSLYLAAAEACNNNGCSQVPGFFIFGDSLVDNGNNNDMLTLARADYSPYGVDFPNGATGRFTNGRTFVDVLAQLLGFPNYIPPYAEARGRALLQGANYASGASGIRDETGNNLELYNLGARKVVVAGVGPIGCIPYQLARFDGKGSRCNDEINSAISLFNAGLRRAVDAFNRGRLPGARFVYLDSFQSSQDLVENATSYGFEVIDEGCCGVGRNNGQITCLPLQMPCDERWKYVFWDAFHPTEAANV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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