Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003285`

染色体: Chr02 坐标: 54145925-54149459 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003285`
名称	SmilChr02G003285
描述	uncharacterized SmilChr02G003285
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	54145925 - 54149459 / `+`

ID 对照

NCBI Gene ID	`LOC131010266`
GeneID	`131010266`
locus_tag	`-`
NCBI Name	`LOC131010266`
原始查询	`SmilChr02G003285`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:826588]; symbol=AT4G09970; hit=AT4G09970; species=arabidopsis; confidence=low
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:826588]; symbol=AT4G09970; hit=AT4G09970; species=arabidopsis; confidence=low
Arabidopsis	`AT4G09970` (AT4G09970) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:826588] identity=30.6; qcov=0.384; evalue=6.66e-09; confidence=low
Rice	`-` -
GO	-
KEGG	-
Pfam	PF01476 (LysM)
InterPro	-
eggNOG	-
NR	GeneID:131010266

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057793698.1`
2	Chloroplast membrane	叶绿体膜	0.60000	`XP_057793698.1`
3	Endoplasmic reticulum	内质网	0.40000	`XP_057793699.1`
4	Nucleus	细胞核	0.20000	`XP_057793699.1`
5	Chloroplast stroma	叶绿体基质	0.20000	`XP_057793698.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:54146033`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B103,B26
`Chr2:54146831`	`G`	`GT`	1bp_insertion	frameshift_variant	1	C84
`Chr2:54146831`	`G`	`GT`	1bp_insertion	CDS_variant	1	C84
`Chr2:54146846`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C28,C85
`Chr2:54148256`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B87,C46,C50
`Chr2:54148788`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr2:54149177`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793698.1

262 aa

131

262

LysM

PF01476 LysM 53-97 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793698.1`	Pfam	`PF01476`	LysM	Domain	53	97	8.9e-11	42.3	LysM domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057937716.1
TTTTCAAACAACACCTAGTTAACAAACAGTCTCTGTGTGTTATGATTGTGATCAGACAAAACTAAAACAGAAATAAATAATGTTCAATGGAACTGAAGCTTAGCCAATCTTCTCTTCCCACACCCATCTTCAATCCATCTTCTTTTTTTCCCAAGCATTTTGCTCTACTTTCTCAGAGATGGAAACTTGATATTCAGAGGATTGCTGGGAAGGGCCGTTTCGCGAGCAAGAAAAACTTGGTTCATTTCTTGAAATTGCTG...

XM_057937715.1
TTCAAACAACACCTAGTTAACAAACAGTCTCTGTGTGTTATGATTGTGATCAGACAAAACTAAAACAGAAATAAATAATGTTCAATGGAACTGAAGCTTAGCCAATCTTCTCTTCCCACACCCATCTTCAATCCATCTTCTTTTTTTCCCAAGCATTTTGCTCTACTTTCTCAGAGATGGAAACTTGATATTCAGAGGATTGCTGGGAAGGGCCGTTTCGCGAGCAAGAAAAACTTGGTTCATGTAGTTAAAGAAGGTGA...

CDS

2 records

下载 CDS FASTA

LOC131010266
ATGGAACTGAAGCTTAGCCAATCTTCTCTTCCCACACCCATCTTCAATCCATCTTCTTTTTTTCCCAAGCATTTTGCTCTACTTTCTCAGAGATGGAAACTTGATATTCAGAGGATTGCTGGGAAGGGCCGTTTCGCGAGCAAGAAAAACTTGGTTCATGTAGTTAAAGAAGGTGAAACTCTGACTTCAATTTCAAAACTGTATGGGGTGCCAGTTCTTGAAATTGCTGATTCGAACAAGGAGATTGCTGATGTCAACAT...

LOC131010266
ATGGAACTGAAGCTTAGCCAATCTTCTCTTCCCACACCCATCTTCAATCCATCTTCTTTTTTTCCCAAGCATTTTGCTCTACTTTCTCAGAGATGGAAACTTGATATTCAGAGGATTGCTGGGAAGGGCCGTTTCGCGAGCAAGAAAAACTTGGTTCATTTCTTGAAATTGCTGATTCGAACAAGGAGATTGCTGATGTCAACATCGTTTTCGAAGGCCAACGTCTCCAAATCCCTTCTGCTGTTGCTGGATGTGCTCAA...

Protein

2 records

下载 Protein FASTA

XP_057793698.1
MELKLSQSSLPTPIFNPSSFFPKHFALLSQRWKLDIQRIAGKGRFASKKNLVHVVKEGETLTSISKLYGVPVLEIADSNKEIADVNIVFEGQRLQIPSAVAGCAQLCDFEGHLLPNGSARLGFHIRQWKTQISSTMPFHQFSIAKAAGSFPILVAVVALCIVCIMGAFRIILAKNSRQKSADKSSNCARWRTALSELRDPDSLDAESAPDSDLQLQPLPDDKEQFHLEDASHGYNKLEGEYEKFLSECGMSSYGYWRGGS...

XP_057793699.1
MELKLSQSSLPTPIFNPSSFFPKHFALLSQRWKLDIQRIAGKGRFASKKNLVHFLKLLIRTRRLLMSTSFSKANVSKSLLLLLDVLNCSIFLMFDLPYQCDFEGHLLPNGSARLGFHIRQWKTQISSTMPFHQFSIAKAAGSFPILVAVVALCIVCIMGAFRIILAKNSRQKSADKSSNCARWRTALSELRDPDSLDAESAPDSDLQLQPLPDDKEQFHLEDASHGYNKLEGEYEKFLSECGMSSYGYWRGGSPQ

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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