Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003286

染色体: Chr02 坐标: 54149753-54151782 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003286
名称SmilChr02G003286
描述uncharacterized SmilChr02G003286
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向54149753 - 54151782 / -

ID 对照

NCBI Gene IDLOC131010268
GeneID131010268
locus_tag-
NCBI NameLOC131010268
原始查询SmilChr02G003286

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述zinc finger/BTB domain protein [Source:NCBI gene (formerly Entrezgene);Acc:840273]; symbol=AT1G33810; hit=AT1G33810; species=arabidopsis; confidence=high
产物zinc finger/BTB domain protein [Source:NCBI gene (formerly Entrezgene);Acc:840273]; symbol=AT1G33810; hit=AT1G33810; species=arabidopsis; confidence=high
ArabidopsisAT1G33810 (AT1G33810)
zinc finger/BTB domain protein [Source:NCBI gene (formerly Entrezgene);Acc:840273]
identity=67.6; qcov=1.02; evalue=3.39e-61; confidence=high
RiceOs08g0112600
-
identity=58.7; qcov=1.03; evalue=1.96e-52; confidence=high
GOGO:0009941 (chloroplast envelope)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131010268

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057793701.1
2 Cytoplasm 细胞质 0.60000 XP_057793702.1
3 Cytosol 细胞质基质 0.20000 XP_057793702.1
4 Mitochondrion 线粒体 0.20000 XP_057793702.1
5 Chloroplast 叶绿体 0.20000 XP_057793702.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:54150386 TGA T 2bp_deletion frameshift_variant 32 A15,B1,B10,B111,B114,B129,B133,B134,B14,B140,B15,B19,B3,B31,B56,B57,B69,B7,B74,B77,B78,B80,B96,C19,C29,C31,C47,C49,C60,C64,C66,C86
Chr2:54150417 G A EMS_canonical_SNV CDS_variant 2 B72,C74
Chr2:54150432 ACT A 2bp_deletion frameshift_variant 4 B31,B42,B43,B67
Chr2:54150432 ACT A 2bp_deletion CDS_variant 4 B31,B42,B43,B67
Chr2:54150460 G A EMS_canonical_SNV CDS_variant 1 B32
Chr2:54151361 G A EMS_canonical_SNV CDS_variant 1 B6
Chr2:54151405 C T EMS_canonical_SNV CDS_variant 3 B28,B46,B99
Chr2:54151408 C T EMS_canonical_SNV CDS_variant 1 B70

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057937719.1
AATTTAAGAAAAAGCCACTTCTTGAAATCTCTAGGGAGTTCTCTAACATTATCTAAAACCTCAAGGGCAGATTTCGCAAAATTTCTGAGAGAGCCCAGCACGGCGTCGTATCACCTTTATCCACTCTACGTTTTATCTTTTTCTTCCTCCAATTCTGGCCTGCACAAACACAAACAGAAAAGAAGGGGAAAAAAGTGCTCAAATTAATCTCAATTATGGCGAAAACGAAGAAAGAGCTTCTGTCATCAGCGCCATGGAGG...
XM_057937718.1
GATTTCGCAAAATTTCTGAGAGAGCCCAGCACGGCGTCGTATCACCTTTATCCACTCTACGTTTTATCTTTTTCTTCCTCCAATTCTGGCCTGCACAAACACAAACAGAAAAGAAGGGGAAAAAAGTGCTCAAATTAATCTCAATTATGGCGAAAACGAAGAAAGAGCTTCTGTCATCAGCGCCATGGAGGGCGGGCCCACAAGAAGACGACAAATTCAAGGACGCAAAGATGAAGGTGACGTCACAGCCGGGTGCAACA...

CDS

2 records

下载 CDS FASTA
LOC131010268
ATGGCGAAAACGAAGAAAGAGCTTCTGTCATCAGCGCCATGGAGGGCGGGCCCACAAGAAGACGACAAATTCAAGGACGCAAAGATGAAGGTGACGTCACAGCCGGGTGCAACACCCACAATGCACGTCCCCGGCAAGAAGAAGTTCGGCTCGAAAAACGATGCCGTTGGCGAGGACTCCCTCACTGAAATCGACCCCGAACTTCGCTACAGCTTCCAGCGCAATTTCCAGTTCCTTCAAAACGTCTTCAGCATTGATAC...
LOC131010268
ATGGCGAAAACGAAGAAAGAGCTTCTGTCATCAGCGCCATGGAGGGCGGGCCCACAAGAAGACGACAAATTCAAGGACGCAAAGATGAAGGTGACGTCACAGCCGGGTGCAACACCCACAATGCACGTCCCCGGCAAGAAGAAGTTCGGCTCGAAAAACGATGCCGTTGGCGAGGACTCCCTCACTGAAATCGACCCCGAACTTCGCTACAGCTTCCAGCGCAATTTCCAGTTCCTTCAAAACGTCTTCAGCATTGATAC...

Protein

2 records

下载 Protein FASTA
XP_057793701.1
MAKTKKELLSSAPWRAGPQEDDKFKDAKMKVTSQPGATPTMHVPGKKKFGSKNDAVGEDSLTEIDPELRYSFQRNFQFLQNVFSIDTVVKPLPPTMAYNVSRNLSFFTRIFTQFFGEFESPSNYRHAIHFMHLSQIKFYV
XP_057793702.1
MAKTKKELLSSAPWRAGPQEDDKFKDAKMKVTSQPGATPTMHVPGKKKFGSKNDAVGEDSLTEIDPELRYSFQRNFQFLQNVFSIDTVVKPLPPTMAYNVSRNLSFFTRIFTQFFDPEGIADAQKSLGLGQEEKARKVR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器