当前解析结果
SmilChr02G003286| 统一新 Gene ID | SmilChr02G003286 |
|---|---|
| 名称 | SmilChr02G003286 |
| 描述 | uncharacterized SmilChr02G003286 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 54149753 - 54151782 / - |
| NCBI Gene ID | LOC131010268 |
|---|---|
| GeneID | 131010268 |
| locus_tag | - |
| NCBI Name | LOC131010268 |
| 原始查询 | SmilChr02G003286 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger/BTB domain protein [Source:NCBI gene (formerly Entrezgene);Acc:840273]; symbol=AT1G33810; hit=AT1G33810; species=arabidopsis; confidence=high |
| 产物 | zinc finger/BTB domain protein [Source:NCBI gene (formerly Entrezgene);Acc:840273]; symbol=AT1G33810; hit=AT1G33810; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G33810 (AT1G33810)zinc finger/BTB domain protein [Source:NCBI gene (formerly Entrezgene);Acc:840273] identity=67.6; qcov=1.02; evalue=3.39e-61; confidence=high |
| Rice | Os08g0112600- identity=58.7; qcov=1.03; evalue=1.96e-52; confidence=high |
| GO | GO:0009941 (chloroplast envelope) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010268 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793701.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057793702.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057793702.1 |
| 4 | Mitochondrion | 线粒体 | 0.20000 | XP_057793702.1 |
| 5 | Chloroplast | 叶绿体 | 0.20000 | XP_057793702.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:54150386 |
TGA |
T |
2bp_deletion | frameshift_variant | 32 | A15,B1,B10,B111,B114,B129,B133,B134,B14,B140,B15,B19,B3,B31,B56,B57,B69,B7,B74,B77,B78,B80,B96,C19,C29,C31,C47,C49,C60,C64,C66,C86 |
Chr2:54150417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B72,C74 |
Chr2:54150432 |
ACT |
A |
2bp_deletion | frameshift_variant | 4 | B31,B42,B43,B67 |
Chr2:54150432 |
ACT |
A |
2bp_deletion | CDS_variant | 4 | B31,B42,B43,B67 |
Chr2:54150460 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr2:54151361 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr2:54151405 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B28,B46,B99 |
Chr2:54151408 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。