Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003288`

染色体: Chr02 坐标: 54154374-54162737 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003288`
名称	SmilChr02G003288
描述	dynamin-2A-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	54154374 - 54162737 / `-`

ID 对照

NCBI Gene ID	`LOC131010269`
GeneID	`131010269`
locus_tag	`-`
NCBI Name	`LOC131010269`
原始查询	`SmilChr02G003288`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	dynamin-2A-like
产物	dynamin-2A-like
Arabidopsis	`AT1G59610` (DL3) dynamin-like 3 [Source:NCBI gene (formerly Entrezgene);Acc:842251] identity=75.3; qcov=1.02; evalue=0; confidence=high
Rice	`Os02g0738900` (BC3) - identity=71.6; qcov=1.01; evalue=0; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0005874 (microtubule); GO:0008017 (microtubule binding); GO:0016020 (membrane)
KEGG	smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)); smil05100 (Bacterial invasion of epithelial cells - Salvia miltiorrhiza (redroot sage))
Pfam	PF00169 (PH); PF00350 (Dynamin_N); PF01031 (Dynamin_M); PF02212 (GED)
InterPro	-
eggNOG	-
NR	GeneID:131010269

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Clathrin-coated vesicle	Clathrin-coated vesicle	0.80000	`XP_057793703.1`
2	Endocytic vesicle	Endocytic vesicle	0.60000	`XP_057793703.1`
3	Cytosol	细胞质基质	0.60000	`XP_057793703.1`
4	Cell membrane	细胞膜	0.60000	`XP_057793703.1`
5	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057793703.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:54154668`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B101,B129,B91,C43,D7
`Chr2:54154815`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:54154849`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B32,B35,B50,B6,C63
`Chr2:54154850`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr2:54155422`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B139,B4,C10,C4
`Chr2:54155444`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B60
`Chr2:54155444`	`TC`	`T`	1bp_deletion	CDS_variant	1	B60
`Chr2:54155488`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B109,B70
`Chr2:54156432`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr2:54156521`	`T`	`TC`	1bp_insertion	frameshift_variant	47	A15,A23,A5,B1,B102,B106,B108,B113,B114,B117,B118,B121,B127,B131,B132,B22,B24,B27,B31,B40,B43,B45,B51,B58,B66,B83,B90,B92,B94,B96,B97,C24,C32,C33,C39,C40,C43,C5,C50,C51,C58,C60,C64,C85,D10,D2,D9
`Chr2:54157844`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B103,B115,C45
`Chr2:54157890`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B28,B99

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793703.1

918 aa

459

918

Dynamin_N

Dynamin_M

GED

PF00350 Dynamin_N 45-208 aa PF01031 Dynamin_M 260-498 aa PF00169 PH 579-701 aa PF02212 GED 737-819 aa

XP_057793704.1

917 aa

458

917

Dynamin_N

Dynamin_M

GED

PF00350 Dynamin_N 45-208 aa PF01031 Dynamin_M 260-498 aa PF00169 PH 579-701 aa PF02212 GED 737-819 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793703.1`	Pfam	`PF00350`	Dynamin_N	Domain	45	208	1.2e-26	94.4	Dynamin family
`XP_057793703.1`	Pfam	`PF01031`	Dynamin_M	Family	260	498	3.9e-24	86.1	Dynamin central region
`XP_057793703.1`	Pfam	`PF00169`	PH	Domain	579	701	1.2e-11	45.8	PH domain
`XP_057793703.1`	Pfam	`PF02212`	GED	Family	737	819	1.7e-13	51.2	Dynamin GTPase effector domain
`XP_057793704.1`	Pfam	`PF00350`	Dynamin_N	Domain	45	208	1.2e-26	94.4	Dynamin family
`XP_057793704.1`	Pfam	`PF01031`	Dynamin_M	Family	260	498	3.9e-24	86.1	Dynamin central region
`XP_057793704.1`	Pfam	`PF00169`	PH	Domain	579	701	1.2e-11	45.8	PH domain
`XP_057793704.1`	Pfam	`PF02212`	GED	Family	737	819	1.7e-13	51.3	Dynamin GTPase effector domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057937721.1
GAATGTACAGTTTTGCCTTTTAAAATTTGAACGCAATCGCTTCACCGTGTCATCACTTTCTTCAACCAATTTTCATTTCTTTCCCAAAATTTTCAAAACTTCAAACTTCCAAACCCTAAATCTCCACAATTCGCACATGAACATATAGATACAATTTACATACACGCTTGTTATTTCGCTCGATCTCCTCCCATTCTATTGGATCTGTGGTTATCGGTACTTCGATCCAGTGGTTTGGTGGAAATTCATCGTTTAATCGC...

XM_057937720.1
ATGTACAGTTTTGCCTTTTAAAATTTGAACGCAATCGCTTCACCGTGTCATCACTTTCTTCAACCAATTTTCATTTCTTTCCCAAAATTTTCAAAACTTCAAACTTCCAAACCCTAAATCTCCACAATTCGCACATGAACATATAGATACAATTTACATACACGCTTGTTATTTCGCTCGATCTCCTCCCATTCTATTGGATCTGTGGTTATCGGTACTTCGATCCAGTGGTTTGGTGGAAATTCATCGTTTAATCGCAT...

CDS

2 records

下载 CDS FASTA

LOC131010269
ATGGAGGCTATCGAGGAATTGGCGCAGCTCTCGGAGTCGATGCGGCAGGCGTCGGCGATGCTCGCCGATGAAGATGTGGACGAGACGACGTCTTCGTCTTCTTCATCCAAGCGCTCGTCCACTTTCCTCAATGTCGTTGCTCTTGGAAACACTGGTGCGGGTAAGTCAGCTGTACTGAATAGTCTGATTGGGCATCCAGCATTGCCAACTGGCGAAGGTGGTGCAACCCGTGCTCCAATATGTGTTGACTTAACAAGGGA...

Protein

2 records

下载 Protein FASTA

XP_057793703.1
MEAIEELAQLSESMRQASAMLADEDVDETTSSSSSSKRSSTFLNVVALGNTGAGKSAVLNSLIGHPALPTGEGGATRAPICVDLTRDSSLSSKSIMLQIDSKSQAVSASALRHSLQDRLSKASGKSRDEIYLKLRTSTAPPLKLIDLPGADKGNVDDSLSLYAERSDAILLVVIPAAQAPEVASAKAIRIAKELDGECTRTVGVISKVDQASSDPKILAAVQALLLNQGPRSTSDIPWVALIGQSVAIASAQSGSVGADN...

XP_057793704.1
MEAIEELAQLSESMRQASAMLADEDVDETTSSSSSSKRSSTFLNVVALGNTGAGKSAVLNSLIGHPALPTGEGGATRAPICVDLTRDSSLSSKSIMLQIDSKSQAVSASALRHSLQDRLSKASGKSRDEIYLKLRTSTAPPLKLIDLPGADKGNVDDSLSLYAERSDAILLVVIPAAQAPEVASAKAIRIAKELDGECTRTVGVISKVDQASSDPKILAAVQALLLNQGPRSTSDIPWVALIGQSVAIASAQSGSVGADN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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