Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003299`

染色体: Chr02 坐标: 54252125-54278414 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003299`
名称	SmilChr02G003299
描述	uncharacterized SmilChr02G003299
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	54252125 - 54278414 / `-`

ID 对照

NCBI Gene ID	`LOC131010278`
GeneID	`131010278`
locus_tag	`-`
NCBI Name	`LOC131010278`
原始查询	`SmilChr02G003299`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Thioredoxin family protein [Source:NCBI gene (formerly Entrezgene);Acc:826591]; symbol=AT4G10000; hit=AT4G10000; species=arabidopsis; confidence=high
产物	Thioredoxin family protein [Source:NCBI gene (formerly Entrezgene);Acc:826591]; symbol=AT4G10000; hit=AT4G10000; species=arabidopsis; confidence=high
Arabidopsis	`AT4G10000` (AT4G10000) Thioredoxin family protein [Source:NCBI gene (formerly Entrezgene);Acc:826591] identity=63.2; qcov=0.818; evalue=1.56e-134; confidence=high
Rice	`Os08g0558200` (OsGRX20) - identity=42.7; qcov=0.569; evalue=2.3e-51; confidence=medium
GO	GO:0009507 (chloroplast)
KEGG	-
Pfam	PF13409 (GST_N_2); PF13417 (GST_N_3)
InterPro	-
eggNOG	-
NR	GeneID:131010278

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057793712.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057793712.1`
3	Chloroplast thylakoid	类囊体	0.80000	`XP_057793712.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057793712.1`
5	Nucleus	细胞核	0.00000	`XP_057793712.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:54270583`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B2,B46
`Chr2:54270644`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B72,C18,C74
`Chr2:54270652`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B5
`Chr2:54270681`	`AC`	`A`	1bp_deletion	frameshift_variant	4	A16,C22,C41,C8
`Chr2:54270681`	`AC`	`A`	1bp_deletion	CDS_variant	4	A16,C22,C41,C8
`Chr2:54271445`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:54271462`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	B82,C1
`Chr2:54271462`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B82,C1
`Chr2:54271485`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C15
`Chr2:54271485`	`TG`	`T`	1bp_deletion	CDS_variant	1	C15
`Chr2:54271779`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr2:54271781`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B65,C34,C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793712.1

362 aa

181

362

GST_N_3

GST_N_2

GST_N_3

PF13417 GST_N_3 157-234 aa PF13409 GST_N_2 162-227 aa PF13417 GST_N_3 278-354 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793712.1`	Pfam	`PF13417`	GST_N_3	Domain	157	234	5.5e-31	107.4	Glutathione S-transferase, N-terminal domain
`XP_057793712.1`	Pfam	`PF13409`	GST_N_2	Domain	162	227	2.5e-16	60.7	Glutathione S-transferase, N-terminal domain
`XP_057793712.1`	Pfam	`PF13417`	GST_N_3	Domain	278	354	5.5e-31	107.4	Glutathione S-transferase, N-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009096522.1
ACAGCAGGGTGCAGTACACAGCAGGGATCTTTTTCCATTTAAATGCACACTAACACGCAATCTTTCGCTCAGTATAACAGTCTCACAACCTCCACATATCTTCAAAATGCATTCCTCATCAAATTTTTCCTCAAACCCATCTTCAATCCGTGAAAAATTACACATAAACTCCAACAAAAGCATAAAATCTTTTGCTAGAGCTCAAATACCACCTTCAACCCTTATCGAATTCAAGCTCGCAGTTTCTCGTGGAAATTATC...

XR_009096523.1
ACAGCAGGGTGCAGTACACAGCAGGGATCTTTTTCCATTTAAATGCACACTAACACGCAATCTTTCGCTCAGTATAACAGTCTCACAACCTCCACATATCTTCAAAATGCATTCCTCATCAAATTTTTCCTCAAACCCATCTTCAATCCGTGAAAAATTACACATAAACTCCAACAAAAGCATAAAATCTTTTGCTAGAGCTCAAATACCACCTTCAACCCTTATCGAATTCAAGCTCGCAGTTTCTCGTGGAAATTATC...

CDS

1 records

下载 CDS FASTA

LOC131010278
ATGCATTCCTCATCAAATTTTTCCTCAAACCCATCTTCAATCCGTGAAAAATTACACATAAACTCCAACAAAAGCATAAAATCTTTTGCTAGAGCTCAAATACCACCTTCAACCCTTATCGAATTCAAGCTCGCAGTTTCTCGTGGAAATTATCATAAGAATGTCGATTCTTGCAAAAGAAACAGACTTCGTGTCAGAAATTCCGCCAATCAGGAAGAGGAAGCCCAATTTTCTCAAGAAAAGGGTGCTCCTGACAATGG...

Protein

1 records

下载 Protein FASTA

XP_057793712.1
MHSSSNFSSNPSSIREKLHINSNKSIKSFARAQIPPSTLIEFKLAVSRGNYHKNVDSCKRNRLRVRNSANQEEEAQFSQEKGAPDNGGGGPSTSLLSFLCPLLKLFSAGDPSAERNYLLEEATSSLSTLARLLWGSRSLPLVLNNEKRANPSLPLQLYEFEACPFCRRVREAITELDLSVEIFPCPKGSVRHRAMVKRLGGREQFPFLVDLNTGTSIYESSDIVKYLFQQYGGNRSPSFGILESTLLTGWVPTLLRAGRG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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