当前解析结果
SmilChr02G003302| 统一新 Gene ID | SmilChr02G003302 |
|---|---|
| 名称 | SmilChr02G003302 |
| 描述 | uncharacterized SmilChr02G003302 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 54296979 - 54300177 / + |
| NCBI Gene ID | LOC131010283 |
|---|---|
| GeneID | 131010283 |
| locus_tag | - |
| NCBI Name | LOC131010283 |
| 原始查询 | SmilChr02G003302 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | electron transporter, putative (DUF179) [Source:NCBI gene (formerly Entrezgene);Acc:840269]; symbol=AT1G33780; hit=AT1G33780; species=arabidopsis; confidence=high |
| 产物 | electron transporter, putative (DUF179) [Source:NCBI gene (formerly Entrezgene);Acc:840269]; symbol=AT1G33780; hit=AT1G33780; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G33780 (AT1G33780)electron transporter, putative (DUF179) [Source:NCBI gene (formerly Entrezgene);Acc:840269] identity=57.8; qcov=0.816; evalue=2.75e-107; confidence=high |
| Rice | Os01g0886000- identity=49.4; qcov=0.681; evalue=4.39e-79; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF02622 (DUF179) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010283 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057793715.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057793715.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057793715.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793715.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793715.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:54297393 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
Chr2:54299015 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,C47 |
Chr2:54299081 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B103,B26 |
Chr2:54299115 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C25 |
Chr2:54299385 |
A |
AT |
1bp_insertion | frameshift_variant | 105 | A1,A11,A13,A16,A18,A5,A7,A9,B1,B10,B101,B105,B109,B111,B114,B115,B117,B118,B119,B120,B124,B125,B127,B128,B131,B133,B14,B140,B18,B20,B25,B27,B3,B33,B35,B36,B38,B46,B48,B49,B51,B53,B55,B57,B58,B60,B63,B65,B68,B70,B73,B75,B8,B83,B87,B89,B93,B98,B99,C14,C15,C16,C20,C21,C22,C23,C26,C27,C28,C30,C32,C34,C39,C4,C40,C43,C46,C47,C5,C50,C55,C61,C63,C65,C66,C68,C69,C7,C70,C72,C73,C80,C81,C82,C83,C84,C85,C87,C9,D10,D3,D4,D5,D6,D7 |
Chr2:54299395 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A5,B124,C25 |
Chr2:54299399 |
CTA |
C |
2bp_deletion | frameshift_variant | 112 | A1,A11,A13,A16,A18,A5,A7,A9,B1,B10,B101,B105,B109,B111,B114,B115,B117,B118,B119,B120,B124,B125,B127,B128,B131,B133,B134,B14,B140,B18,B20,B25,B27,B3,B30,B33,B35,B36,B38,B4,B46,B48,B49,B51,B53,B55,B57,B58,B60,B63,B65,B68,B70,B73,B75,B77,B8,B83,B87,B89,B93,B94,B98,B99,C14,C15,C16,C2,C20,C21,C22,C23,C27,C28,C30,C32,C34,C38,C39,C4,C43,C46,C47,C5,C50,C53,C55,C61,C63,C65,C66,C67,C68,C69,C7,C70,C72,C73,C80,C81,C82,C83,C84,C85,C87,C9,D10,D3,D4,D5,D6,D7 |
Chr2:54299419 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B46,B68,C32,D4 |
Chr2:54299453 |
TGC |
T |
2bp_deletion | frameshift_variant | 221 | A1,A10,A11,A13,A14,A15,A16,A18,A20,A21,A22,A23,A25,A4,A5,A7,A8,A9,B1,B10,B100,B101,B103,B104,B105,B106,B109,B11,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B123,B124,B125,B126,B127,B128,B129,B130,B131,B133,B134,B135,B137,B138,B139,B14,B140,B15,B17,B18,B19,B2,B21,B22,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B41,B42,B44,B45,B46,B48,B49,B5,B51,B52,B53,B55,B56,B57,B58,B59,B60,B62,B63,B64,B65,B66,B67,B68,B69,B70,B71,B72,B73,B75,B76,B77,B78,B8,B80,B81,B83,B84,B85,B86,B87,B88,B89,B9,B91,B92,B93,B94,B95,B96,B97,B98,B99,C10,C11,C13,C14,C15,C16,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C30,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C5,C50,C51,C52,C53,C54,C55,C56,C57,C59,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D9 |
Chr2:54299456 |
C |
CTA |
2bp_insertion | frameshift_variant | 219 | A1,A10,A11,A13,A14,A15,A16,A18,A20,A21,A22,A23,A25,A4,A5,A7,A8,A9,B1,B10,B100,B101,B103,B104,B105,B106,B109,B11,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B123,B124,B125,B126,B127,B128,B129,B130,B131,B133,B134,B135,B137,B138,B139,B14,B140,B15,B17,B18,B19,B2,B21,B22,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B41,B42,B44,B45,B46,B48,B49,B5,B51,B52,B53,B55,B56,B57,B58,B59,B60,B62,B63,B64,B65,B66,B67,B68,B69,B70,B71,B72,B73,B75,B76,B77,B78,B8,B80,B81,B83,B84,B85,B86,B87,B88,B89,B9,B91,B92,B93,B94,B95,B96,B97,B98,B99,C10,C11,C13,C14,C15,C16,C18,C19,C2,C20,C21,C22,C23,C24,C25,C27,C28,C29,C30,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C5,C50,C51,C52,C53,C54,C55,C56,C57,C59,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D9 |
Chr2:54299458 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B100,C29 |
Chr2:54299476 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793715.1PF02622
DUF179 160-337 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793715.1 |
Pfam | PF02622 |
DUF179 | Domain | 160 | 337 | 2.3e-33 | 115.9 | AlgH-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。