Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003303`

染色体: Chr02 坐标: 54300201-54303621 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003303`
名称	SmilChr02G003303
描述	probable serine/threonine-protein kinase At1g09600
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	54300201 - 54303621 / `-`

ID 对照

NCBI Gene ID	`LOC131010282`
GeneID	`131010282`
locus_tag	`-`
NCBI Name	`LOC131010282`
原始查询	`SmilChr02G003303`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable serine/threonine-protein kinase At1g09600
产物	probable serine/threonine-protein kinase At1g09600
Arabidopsis	`AT4G10010` (AT4G10010) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826592] identity=53.6; qcov=1.04; evalue=0; confidence=high
Rice	`Os02g0559300` (Orysa) - identity=50.3; qcov=0.934; evalue=0; confidence=high
GO	GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0004693 (cyclin-dependent protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006468 (protein phosphorylation); GO:0008353 (RNA polymerase II CTD heptapeptide repeat kinase activity); GO:0032968 (positive regulation of transcription elongation by RNA polymerase II)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131010282

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057793714.1`
2	Cytosol	细胞质基质	0.60000	`XP_057793714.1`
3	Nucleus	细胞核	0.00000	`XP_057793714.1`
4	Chromosome	染色体	0.00000	`XP_057793714.1`
5	Centromere	着丝粒	0.00000	`XP_057793714.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:54300734`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A18,B56,B96,C5
`Chr2:54300735`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr2:54301057`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr2:54301184`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr2:54301208`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr2:54301326`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr2:54301545`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr2:54301785`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C47,D11
`Chr2:54301886`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C26,C87
`Chr2:54302099`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr2:54302196`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr2:54302277`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B87,C46,C50

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793714.1

638 aa

319

638

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 139-423 aa PF07714 PK_Tyr_Ser-Thr 141-351 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793714.1`	Pfam	`PF00069`	Pkinase	Domain	139	423	4.3e-71	240.1	Protein kinase domain
`XP_057793714.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	141	351	1.1e-34	120.7	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937731.1
ATATTTTTTATTTGAAAATATAGGGAAGAAGAGGAAGTGTTGATAGTATTCCAAGGAACAAAAAGTGTTTTCTGGAACCCAAAATCTCCCATTAGGCACCTCCAAACCTTGACCAGAACTCTTGCATCAAATCATATAGGCATAGTTCCAATATATATTCGTGTATATATTCATATGCATTTATCCAAAAACATATGTAAAACCTTTTTGATGTAATGCTAAATTCTGGTCTAGGCTTTTGAAATTCAAACCCTTTTCTC...

CDS

1 records

下载 CDS FASTA

LOC131010282
ATGGGGTGCCTATGTTCAAAAGGAACCGATGTTAACGATCACGTTGCCGAACATGAAGCGAAGAAAGAGAAGGAGAGAAGCAAATCTCCAGTTGAGCTGACTCCACCGGAGGAGGTCACAGTGAAAGGCAACGATGGCTCCCGGCGTTCGCACTCCTTGTTAAAATCGAGCTCGAGTTCTGTTCCGGCCGAACAAAACCCCAAGGATAAGATCATCGATAGGCCCGCGAGCGGACACAGTAGGCATTTGACATTGGGTTC...

Protein

1 records

下载 Protein FASTA

XP_057793714.1
MGCLCSKGTDVNDHVAEHEAKKEKERSKSPVELTPPEEVTVKGNDGSRRSHSLLKSSSSSVPAEQNPKDKIIDRPASGHSRHLTLGSMRGRGKQEPVSSITSLPQGAKGEAAAAGWPPWLTSAAGEAVKGWAPRSADSYEKLKKIGQGTYSSVYKARDLKTDRIVAMKKVRFIQMDPESVRFMAREIGILRRLDHPNVMRLEAIVISSVSGSLYLVFEYMEHDLAGLLASTKVKFTEPQIKCYMQQILHGLEHCHSRGIL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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