Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003307`

染色体: Chr02 坐标: 54336271-54341230 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003307`
名称	SmilChr02G003307
描述	uncharacterized SmilChr02G003307
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	54336271 - 54341230 / `-`

ID 对照

NCBI Gene ID	`LOC131010287`
GeneID	`131010287`
locus_tag	`-`
NCBI Name	`LOC131010287`
原始查询	`SmilChr02G003307`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826594]; symbol=AT4G10030; hit=AT4G10030; species=arabidopsis; confidence=high
产物	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826594]; symbol=AT4G10030; hit=AT4G10030; species=arabidopsis; confidence=high
Arabidopsis	`AT4G10030` (AT4G10030) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826594] identity=64; qcov=0.938; evalue=2.34e-141; confidence=high
Rice	`Os01g0885600` - identity=59.6; qcov=1.02; evalue=3.54e-140; confidence=high
GO	-
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:131010287

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057793720.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057793720.1`
3	Nucleus	细胞核	0.00000	`XP_057793720.1`
4	Chromosome	染色体	0.00000	`XP_057793720.1`
5	Centromere	着丝粒	0.00000	`XP_057793720.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:54336879`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B82,C1
`Chr2:54337099`	`G`	`GGC`	2bp_insertion	frameshift_variant	2	B107,C47
`Chr2:54337099`	`G`	`GGC`	2bp_insertion	CDS_variant	2	B107,C47
`Chr2:54337287`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr2:54337762`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B95,C14,C83
`Chr2:54337791`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B59,C78
`Chr2:54337792`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr2:54338315`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B117,B24,C24
`Chr2:54340829`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793720.1

377 aa

188

377

Abhydrolase_1

Abhydrolase_6

PF00561 Abhydrolase_1 106-199 aa PF12697 Abhydrolase_6 106-367 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793720.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	106	199	4e-12	47.1	alpha/beta hydrolase fold
`XP_057793720.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	106	367	9.7e-18	66.3	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057937738.1
TTTGGGCAGCAGTGAGCAGGGACATTTCCGTAAAGCAACAAGGGCAGCATTGAGCAGGTGGGTTTAATTCGCTCGTCTTTTTCCGCTCTCTGGCGGAGACGTAGAGAGAGAAAGCGACAACGATCTCAAAGAGACAGTTGAAGCCACGAAAAGAGCTCCACACTCCAGCTTCGGTCTCTCCGCCTCATTTGGGCTTTTGCGCTTCCCAATTTACCCCTCCTCTCTCTCTCTCTCTCGAGCTTCAACCGCTGGCCTTTCCT...

XM_057937737.1
TTGGGCAGCAGTGAGCAGGGACATTTCCGTAAAGCAACAAGGGCAGCATTGAGCAGGTGGGTTTAATTCGCTCGTCTTTTTCCGCTCTCTGGCGGAGACGTAGAGAGAGAAAGCGACAACGATCTCAAAGAGACAGTTGAAGCCACGAAAAGAGCTCCACACTCCAGCTTCGGTCTCTCCGCCTCATTTGGGCTTTTGCGCTTCCCAATTTACCCCTCCTCTCTCTCTCTCTCTCGAGCTTCAACCGCTGGCCTTTCCTG...

CDS

2 records

下载 CDS FASTA

LOC131010287
ATGTCGGCGGTTCCGAGGTATACGTGCCGGCATTTCGACATCAAACCTACATTCATATCAGATAATCAGCTCGCTTTGACGTCGTCGGTCAATCACAGGCAGGTGAAGCTCAGGCCGTTGCGCGAGGTAGCTTTCAATCGCTCAAGAAGGGCATCAATATGTCCGAAAATATGCATGTCGATGGTAGACGAGAGGCTAGTGGATAGGAGTACTGTTGTGAAGCCTGGTGACATTTTGGCATATGATCTTGTTCAAGGAGC...

Protein

2 records

下载 Protein FASTA

XP_057793720.1
MSAVPRYTCRHFDIKPTFISDNQLALTSSVNHRQVKLRPLREVAFNRSRRASICPKICMSMVDERLVDRSTVVKPGDILAYDLVQGADVRWSYILDKAAPEPPTAVLLHGILGSRKNWGTFARRLAKEFPKWQFLLVDLRCHGDSASLKKRGPHSVASAALDVLKLLGVLKLTPRVVVGHSFGGKVCLSMVDQVPKPLARPVRVWVLDSTPGKVRAGADGDDHPAELISFLSTLPKEVSSKQDVVDALLDHGFSKDVAHW...

XP_057793721.1
MSAVPRYTCRHFDIKPTFISDNQLALTSSVNHRQVKLRPLREVAFNRSRRASICPKICMSMVDERLVDRSTVVKPGDILAYDLVQGADVRWSYILDKAAPEPPTAVLLHGILGSRKNWGTFARRLAKEFPKWQFLLVDLRCHGDSASLKKRGPHSVASAALDVLKLVWVLDSTPGKVRAGADGDDHPAELISFLSTLPKEVSSKQDVVDALLDHGFSKDVAHWVVTNLRQMRINGASYPSLSWAFNLNGISEMYQSYEET...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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