Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003322`

染色体: Chr02 坐标: 54473930-54480194 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003322`
名称	SmilChr02G003322
描述	uncharacterized SmilChr02G003322
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	54473930 - 54480194 / `-`

ID 对照

NCBI Gene ID	`LOC131010302`
GeneID	`131010302`
locus_tag	`-`
NCBI Name	`LOC131010302`
原始查询	`SmilChr02G003322`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	KH domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:840259]; symbol=AT1G33680; hit=AT1G33680; species=arabidopsis; confidence=medium
产物	KH domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:840259]; symbol=AT1G33680; hit=AT1G33680; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G33680` (AT1G33680) KH domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:840259] identity=38.9; qcov=1.04; evalue=8.29e-117; confidence=medium
Rice	`Os08g0110800` - identity=66.1; qcov=0.237; evalue=2.18e-67; confidence=weak
GO	GO:0003729 (mRNA binding); GO:0005737 (cytoplasm); GO:0010468 (regulation of gene expression)
KEGG	-
Pfam	PF00013 (KH_1)
InterPro	-
eggNOG	-
NR	GeneID:131010302

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793740.1`
2	Nucleoplasm	核质	1.00000	`XP_057793740.1`
3	Chromosome	染色体	0.00000	`XP_057793740.1`
4	Centromere	着丝粒	0.00000	`XP_057793740.1`
5	Chromatin	染色质	0.00000	`XP_057793740.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:54474337`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A5,B124,B27,C25
`Chr2:54474372`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A3,B64,B71,C62
`Chr2:54474468`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,C43,D7
`Chr2:54474505`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B106,B73
`Chr2:54474568`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr2:54474592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr2:54474770`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B27,B55
`Chr2:54475001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr2:54475085`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A9,C75,C8,D1
`Chr2:54475264`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:54475298`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr2:54475394`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793740.1

761 aa

380

761

KH_1

PF00013 KH_1 228-293 aa PF00013 KH_1 323-389 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793740.1`	Pfam	`PF00013`	KH_1	Domain	228	293	2.4e-36	124.0	KH domain
`XP_057793740.1`	Pfam	`PF00013`	KH_1	Domain	323	389	2.4e-36	124.0	KH domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937757.1
AAATATATATACACACCAACCAAATGAAATGCGTCGAGATAAACAAAAAATAAATTTATTAAACAGGAAAAGGGGCTCACGATTCACCCACGTAGGTACTGGGAAGTGGAAACCCTAATCGTAGCTGCGACGACGTTAGCTGATCTGCAGAGAAAATCAATTATGGCGGATGAGAACGTGACCACGCCGGCAGAAGCTAGCCCCGTTACATCCGCCACCGCCGCCGGAGATGGCCACAAGAGGAAGCTCGAGGATTTTGA...

CDS

1 records

下载 CDS FASTA

LOC131010302
ATGGCGGATGAGAACGTGACCACGCCGGCAGAAGCTAGCCCCGTTACATCCGCCACCGCCGCCGGAGATGGCCACAAGAGGAAGCTCGAGGATTTTGAGCACAGCGAAGCGGTTGCGGAGTCCGAGAACAACTCGGATCGTGACGCGTTGGAGAACGGGTCGCAGGAGGAGGGGAATGGCGCTGTGGATGAATCTGAGGCTAAACGGCCCCGTTTGGAGAGCAATGGCGATAATGTTGCGGAGGCAGATTTCTCAGCTCC...

Protein

1 records

下载 Protein FASTA

XP_057793740.1
MADENVTTPAEASPVTSATAAGDGHKRKLEDFEHSEAVAESENNSDRDALENGSQEEGNGAVDESEAKRPRLESNGDNVAEADFSAPQNGHTEEEKEDEPNEEKEDEPCEEKEDEPTEEKEDEPTEEKEDEPTEEKEDEPKEESEQPKPEDNDCQSLVGQEPVEEPPETTTKETVPDDYEKTDVGSAEEPAQSNAEFEEETSHLPREGDVPVESADRQPGSDTILSRKMEVPNDKVGVLIGKAGDTIRSLQDNSGAKIQI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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