当前解析结果
SmilChr02G003334| 统一新 Gene ID | SmilChr02G003334 |
|---|---|
| 名称 | SmilChr02G003334 |
| 描述 | mannan endo-1,4-beta-mannosidase 1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 54579301 - 54582613 / + |
| NCBI Gene ID | LOC131010339 |
|---|---|
| GeneID | 131010339 |
| locus_tag | - |
| NCBI Name | LOC131010339 |
| 原始查询 | SmilChr02G003334 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mannan endo-1,4-beta-mannosidase 1-like |
| 产物 | mannan endo-1%2C4-beta-mannosidase 1-like |
| Arabidopsis | AT5G66460 (MAN7)Glycosyl hydrolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836778] identity=50.1; qcov=0.967; evalue=8.78e-145; confidence=high |
| Rice | Os01g0663300- identity=51.2; qcov=0.885; evalue=1.41e-137; confidence=high |
| GO | GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0071704 (GO:0071704) |
| KEGG | smil00051 (Fructose and mannose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00150 (Cellulase); PF26410 (GH5_mannosidase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010339 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057793798.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057793798.1 |
| 3 | Secreted | 分泌到胞外 | 0.20000 | XP_057793799.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057793798.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057793798.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:54581854 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr2:54581941 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B4,C4,C45,D3 |
Chr2:54581946 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B4,C45,D3 |
Chr2:54581953 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B4,C45,D3 |
Chr2:54581965 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr2:54582046 |
A |
AT |
1bp_insertion | frameshift_variant | 58 | A1,A13,A23,A25,A9,B103,B109,B110,B111,B117,B118,B123,B131,B132,B136,B137,B139,B29,B30,B35,B43,B50,B51,B59,B6,B62,B66,B67,B68,B72,B76,B78,B8,B89,B9,B95,C1,C18,C22,C27,C3,C32,C35,C37,C52,C53,C57,C67,C68,C7,C75,C78,C8,C83,C85,C86,D1,D3 |
Chr2:54582057 |
G |
GTA |
2bp_insertion | frameshift_variant | 26 | A24,A5,B108,B112,B124,B27,B29,B3,B38,B39,B5,B50,B59,B7,B93,B94,B97,C13,C23,C25,C30,C33,C48,C57,C59,C84 |
Chr2:54582113 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr2:54582129 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B4,B97 |
Chr2:54582157 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B133,C41,C81 |
Chr2:54582190 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,C24 |
Chr2:54582233 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B109,B130,B136,B139 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793798.1PF26410
GH5_mannosidase 34-382 aa
PF00150
Cellulase 40-357 aa
XP_057793799.1PF26410
GH5_mannosidase 34-358 aa
PF00150
Cellulase 40-333 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793798.1 |
Pfam | PF26410 |
GH5_mannosidase | Domain | 34 | 382 | 1.3e-44 | 153.4 | GH family 5 beta-mannosidase-like |
XP_057793798.1 |
Pfam | PF00150 |
Cellulase | Domain | 40 | 357 | 3.1e-14 | 53.8 | Cellulase (glycosyl hydrolase family 5) |
XP_057793799.1 |
Pfam | PF26410 |
GH5_mannosidase | Domain | 34 | 358 | 2.2e-46 | 159.3 | GH family 5 beta-mannosidase-like |
XP_057793799.1 |
Pfam | PF00150 |
Cellulase | Domain | 40 | 333 | 4.7e-15 | 56.5 | Cellulase (glycosyl hydrolase family 5) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。