Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003345

染色体: Chr02 坐标: 54672454-54676573 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003345
名称SmilChr02G003345
描述uncharacterized SmilChr02G003345
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向54672454 - 54676573 / -

ID 对照

NCBI Gene IDLOC131010363
GeneID131010363
locus_tag-
NCBI NameLOC131010363
原始查询SmilChr02G003345

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述tropomyosin [Source:NCBI gene (formerly Entrezgene);Acc:840244]; symbol=AT1G33500; hit=AT1G33500; species=arabidopsis; confidence=high
产物tropomyosin [Source:NCBI gene (formerly Entrezgene);Acc:840244]; symbol=AT1G33500; hit=AT1G33500; species=arabidopsis; confidence=high
ArabidopsisAT1G33500 (AT1G33500)
tropomyosin [Source:NCBI gene (formerly Entrezgene);Acc:840244]
identity=47; qcov=0.971; evalue=1.32e-67; confidence=high
RiceOs08g0320300
-
identity=43.5; qcov=0.478; evalue=1.11e-28; confidence=medium
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131010363

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoskeleton 细胞骨架 1.00000 XP_057793840.1
2 Spindle Spindle 1.00000 XP_057793840.1
3 Chromosome 染色体 0.60000 XP_057793840.1
4 Spindle pole Spindle pole 0.60000 XP_057793840.1
5 Centromere 着丝粒 0.40000 XP_057793840.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:54672932 G A EMS_canonical_SNV CDS_variant 3 B100,B101,B40
Chr2:54672974 G A EMS_canonical_SNV CDS_variant 3 A23,B118,D11
Chr2:54673663 G A EMS_canonical_SNV CDS_variant 1 C74
Chr2:54673824 G A EMS_canonical_SNV CDS_variant 3 B100,B101,B40
Chr2:54674572 C T EMS_canonical_SNV CDS_variant 5 B36,B61,C12,C5,D10
Chr2:54674573 G A EMS_canonical_SNV CDS_variant 3 B26,C53,D11
Chr2:54674858 C T EMS_canonical_SNV CDS_variant 1 B70
Chr2:54675779 C T EMS_canonical_SNV CDS_variant 3 A23,B118,D11
Chr2:54676112 G A EMS_canonical_SNV CDS_variant 1 A15
Chr2:54676344 A AC 1bp_insertion frameshift_variant 35 A15,A23,A4,A7,B113,B118,B122,B128,B129,B27,B36,B38,B39,B47,B61,B64,B65,B70,B8,B91,C12,C25,C29,C47,C49,C5,C6,C64,C66,C71,C79,C8,D10,D4,D8
Chr2:54676357 C CT 1bp_insertion frameshift_variant 34 A7,B110,B111,B123,B137,B139,B2,B29,B30,B31,B4,B42,B43,B45,B51,B57,B6,B62,B66,B72,B88,B97,C30,C35,C37,C4,C48,C51,C52,C64,C66,C67,C8,D7

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XR_009096534.1
CACTCTATTCTCCCTACACCCCACCTGCACCGGAACTTTACCTCATTTCCCTCCAAACCCGCTTCCCACGGCTATAAAACAATCAACAACCCCGCGTATTTCAAAATTCTCTCTTCTCTCTCTCAAATACTGAAGATCAGCAGTTTCAATGGAGGAATTGTTTCAGTACATGAAGACCCTGCGCTCTCAGATCAACGATGTGGCGGATCACGCAGCTAAAATGTCCGTGGAAGAGCATATGCAGAAAACTACTATTGAGA...
XR_009096535.1
TCTCCCTACACCCCACCTGCACCGGAACTTTACCTCATTTCCCTCCAAACCCGCTTCCCACGGCTATAAAACAATCAACAACCCCGCGTATTTCAAAATTCTCTCTTCTCTCTCTCAAATACTGAAGCAGTTTCAATGGAGGAATTGTTTCAGTACATGAAGACCCTGCGCTCTCAGATCAACGATGTGGCGGATCACGCAGCTAAAATGTCCGTGGAAGAGCATATGCAGAAAACTACTATTGAGACTCTCCAAAAGGA...

CDS

2 records

下载 CDS FASTA
LOC131010363
ATGCGAGTTAATTTTCGTTTGCAATCATGCGCTGTGAAACTTAAAAGTATTTCCATGGGTAGATCAGCAGTTTCAATGGAGGAATTGTTTCAGTACATGAAGACCCTGCGCTCTCAGATCAACGATGTGGCGGATCACGCAGCTAAAATGTCCGTGGAAGAGCATATGCAGAAAACTACTATTGAGACTCTCCAAAAGGATCTTGATTCAGTGAGGAATGATAGTAAGCAAGTCAAGGAGGAAGCTGATCGGATAGCTAA...
LOC131010363
ATGCGAGTTAATTTTCGTTTGCAATCATGCGCTGTGAAACTTAAAAGTATTTCCATGGGTAGATCAGCAGTTTCAATGGAGGAATTGTTTCAGTACATGAAGACCCTGCGCTCTCAGATCAACGATGTGGCGGATCACGCAGCTAAAATGTCCGTGGAAGAGCATATGCAGAAAACTACTATTGAGACTCTCCAAAAGGATCTTGATTCAGTGAGGAATGATAGTAAGCAAGTCAAGGAGGAAGCTGATCGGATAGCTAA...

Protein

2 records

下载 Protein FASTA
XP_057793840.1
MRVNFRLQSCAVKLKSISMGRSAVSMEELFQYMKTLRSQINDVADHAAKMSVEEHMQKTTIETLQKDLDSVRNDSKQVKEEADRIAKATGEICLQILQKQRKIASYEADSYTLSKTLELMQQERLSLSAKLVERSAHYKKVTEDISGQLNEQQKWVKTQNFSSKTGDHLVNENSNGIKEFPDGVDESIMMDFQAAQAKFDEIKQLKSDLVLENTKLRQSVELVKAKMTNFKPELREMSEKTLEEEVQALLSDKAGEAEYM...
XP_057793841.1
MRVNFRLQSCAVKLKSISMGRSAVSMEELFQYMKTLRSQINDVADHAAKMSVEEHMQKTTIETLQKDLDSVRNDSKQVKEEADRIAKATGEICLQILQKQRKIASYEADSYTLSKTLELMQQERLSLSAKLVERSAHYKKVTEDISGQLNEQQKWVKTQNFSSKTGDHLVNENSNGIKEFPDGVDESIMMDFQAAQAKFDEIKQLKSDLVLENTKPELREMSEKTLEEEVQALLSDKAGEAEYMESLQLQIMRLKEISNN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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