当前解析结果
SmilChr02G003345| 统一新 Gene ID | SmilChr02G003345 |
|---|---|
| 名称 | SmilChr02G003345 |
| 描述 | uncharacterized SmilChr02G003345 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 54672454 - 54676573 / - |
| NCBI Gene ID | LOC131010363 |
|---|---|
| GeneID | 131010363 |
| locus_tag | - |
| NCBI Name | LOC131010363 |
| 原始查询 | SmilChr02G003345 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | tropomyosin [Source:NCBI gene (formerly Entrezgene);Acc:840244]; symbol=AT1G33500; hit=AT1G33500; species=arabidopsis; confidence=high |
| 产物 | tropomyosin [Source:NCBI gene (formerly Entrezgene);Acc:840244]; symbol=AT1G33500; hit=AT1G33500; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G33500 (AT1G33500)tropomyosin [Source:NCBI gene (formerly Entrezgene);Acc:840244] identity=47; qcov=0.971; evalue=1.32e-67; confidence=high |
| Rice | Os08g0320300- identity=43.5; qcov=0.478; evalue=1.11e-28; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010363 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057793840.1 |
| 2 | Spindle | Spindle | 1.00000 | XP_057793840.1 |
| 3 | Chromosome | 染色体 | 0.60000 | XP_057793840.1 |
| 4 | Spindle pole | Spindle pole | 0.60000 | XP_057793840.1 |
| 5 | Centromere | 着丝粒 | 0.40000 | XP_057793840.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:54672932 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,B101,B40 |
Chr2:54672974 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B118,D11 |
Chr2:54673663 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr2:54673824 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,B101,B40 |
Chr2:54674572 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B36,B61,C12,C5,D10 |
Chr2:54674573 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,C53,D11 |
Chr2:54674858 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr2:54675779 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A23,B118,D11 |
Chr2:54676112 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr2:54676344 |
A |
AC |
1bp_insertion | frameshift_variant | 35 | A15,A23,A4,A7,B113,B118,B122,B128,B129,B27,B36,B38,B39,B47,B61,B64,B65,B70,B8,B91,C12,C25,C29,C47,C49,C5,C6,C64,C66,C71,C79,C8,D10,D4,D8 |
Chr2:54676357 |
C |
CT |
1bp_insertion | frameshift_variant | 34 | A7,B110,B111,B123,B137,B139,B2,B29,B30,B31,B4,B42,B43,B45,B51,B57,B6,B62,B66,B72,B88,B97,C30,C35,C37,C4,C48,C51,C52,C64,C66,C67,C8,D7 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。