当前解析结果
SmilChr02G003346| 统一新 Gene ID | SmilChr02G003346 |
|---|---|
| 名称 | SmilChr02G003346 |
| 描述 | glycerophosphodiester phosphodiesterase GDPD4 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 54676741 - 54680443 / + |
| NCBI Gene ID | LOC131010357 |
|---|---|
| GeneID | 131010357 |
| locus_tag | - |
| NCBI Name | LOC131010357 |
| 原始查询 | SmilChr02G003346 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glycerophosphodiester phosphodiesterase GDPD4 |
| 产物 | glycerophosphodiester phosphodiesterase GDPD4 |
| Arabidopsis | AT1G71340 (GDPD4)PLC-like phosphodiesterases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843475] identity=62.3; qcov=0.989; evalue=4.63e-123; confidence=high |
| Rice | Os11g0236000- identity=70.2; qcov=0.213; evalue=3.73e-26; confidence=weak |
| GO | GO:0006629 (lipid metabolic process); GO:0008081 (phosphoric diester hydrolase activity) |
| KEGG | - |
| Pfam | PF03009 (GDPD); PF31089 (SPH) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010357 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 0.80000 | XP_057793831.1 |
| 2 | Cell membrane | 细胞膜 | 0.60000 | XP_057793830.1 |
| 3 | Cell wall | 细胞壁 | 0.20000 | XP_057793832.1 |
| 4 | Vacuole | 液泡 | 0.20000 | XP_057793831.1 |
| 5 | Secreted | 分泌到胞外 | 0.20000 | XP_057793832.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:54676815 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B31,B45,C64,C66 |
Chr2:54676885 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr2:54676908 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr2:54678462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B129,B65,B91,C71 |
Chr2:54678570 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B64,B8 |
Chr2:54678576 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr2:54678870 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr2:54679923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
Chr2:54679997 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr2:54680115 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:54680148 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B118,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793830.1PF03009
GDPD 79-305 aa
PF31089
SPH 276-315 aa
XP_057793831.1PF03009
GDPD 79-170 aa
PF03009
GDPD 217-275 aa
PF31089
SPH 246-285 aa
XP_057793832.1PF03009
GDPD 19-245 aa
PF31089
SPH 216-255 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793830.1 |
Pfam | PF03009 |
GDPD | Family | 79 | 305 | 3.2e-23 | 83.8 | Glycerophosphoryl diester phosphodiesterase family |
XP_057793830.1 |
Pfam | PF31089 |
SPH | Domain | 276 | 315 | 5.9e-08 | 33.0 | Dermonecrotic toxin SPH |
XP_057793831.1 |
Pfam | PF03009 |
GDPD | Family | 79 | 170 | 1e-22 | 82.2 | Glycerophosphoryl diester phosphodiesterase family |
XP_057793831.1 |
Pfam | PF03009 |
GDPD | Family | 217 | 275 | 1e-22 | 82.2 | Glycerophosphoryl diester phosphodiesterase family |
XP_057793831.1 |
Pfam | PF31089 |
SPH | Domain | 246 | 285 | 4.7e-08 | 33.4 | Dermonecrotic toxin SPH |
XP_057793832.1 |
Pfam | PF03009 |
GDPD | Family | 19 | 245 | 1.6e-23 | 84.8 | Glycerophosphoryl diester phosphodiesterase family |
XP_057793832.1 |
Pfam | PF31089 |
SPH | Domain | 216 | 255 | 3e-08 | 34.0 | Dermonecrotic toxin SPH |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。