Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003351`

染色体: Chr02 坐标: 54692523-54696872 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003351`
名称	SmilChr02G003351
描述	uncharacterized SmilChr02G003351
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	54692523 - 54696872 / `-`

ID 对照

NCBI Gene ID	`LOC131010340`
GeneID	`131010340`
locus_tag	`-`
NCBI Name	`LOC131010340`
原始查询	`SmilChr02G003351`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os01g0876800; species=rice; confidence=high
产物	hit=Os01g0876800; species=rice; confidence=high
Arabidopsis	`AT1G33470` (AT1G33470) RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:840240] identity=57.2; qcov=0.964; evalue=4.35e-93; confidence=high
Rice	`Os01g0876800` - identity=60.6; qcov=0.946; evalue=7.25e-105; confidence=high
GO	GO:0003723 (RNA binding)
KEGG	-
Pfam	PF00076 (RRM_1)
InterPro	-
eggNOG	-
NR	GeneID:131010340

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793800.1`
2	Cytoplasm	细胞质	0.80000	`XP_057793800.1`
3	Nucleoplasm	核质	0.40000	`XP_057793801.1`
4	Chromosome	染色体	0.00000	`XP_057793800.1`
5	Centromere	着丝粒	0.00000	`XP_057793800.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:54693753`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B115,B133,C41,C45,C81
`Chr2:54693815`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr2:54693828`	`C`	`CAA`	2bp_insertion	frameshift_variant	5	B115,B133,C41,C45,C81
`Chr2:54693828`	`C`	`CAA`	2bp_insertion	CDS_variant	5	B115,B133,C41,C45,C81
`Chr2:54693966`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr2:54694005`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B71,C62
`Chr2:54694080`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr2:54695386`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B127,B20,B21
`Chr2:54695443`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:54696481`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793800.1

316 aa

158

316

RRM_1

PF00076 RRM_1 19-74 aa

XP_057793801.1

285 aa

142

285

RRM_1

PF00076 RRM_1 19-74 aa

XP_057793802.1

279 aa

140

279

RRM_1

PF00076 RRM_1 19-74 aa

XP_057793803.1

316 aa

158

316

RRM_1

PF00076 RRM_1 19-74 aa

XP_057793804.1

316 aa

158

316

RRM_1

PF00076 RRM_1 19-74 aa

XP_057793805.1

285 aa

142

285

RRM_1

PF00076 RRM_1 19-74 aa

XP_057793806.1

279 aa

140

279

RRM_1

PF00076 RRM_1 19-74 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793800.1`	Pfam	`PF00076`	RRM_1	Domain	19	74	7.7e-16	58.4	RNA recognition motif
`XP_057793801.1`	Pfam	`PF00076`	RRM_1	Domain	19	74	6.5e-16	58.7	RNA recognition motif
`XP_057793802.1`	Pfam	`PF00076`	RRM_1	Domain	19	74	6.3e-16	58.7	RNA recognition motif
`XP_057793803.1`	Pfam	`PF00076`	RRM_1	Domain	19	74	7.7e-16	58.4	RNA recognition motif
`XP_057793804.1`	Pfam	`PF00076`	RRM_1	Domain	19	74	7.7e-16	58.4	RNA recognition motif
`XP_057793805.1`	Pfam	`PF00076`	RRM_1	Domain	19	74	6.5e-16	58.7	RNA recognition motif
`XP_057793806.1`	Pfam	`PF00076`	RRM_1	Domain	19	74	6.3e-16	58.7	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057937817.1
CGCCCTTTCTTCTTTTTCCAATTCCACCTTTTTTTATTTTATTTTATTTTCTCTTCCCTCCATTTCTCTCTCTCCTCCTCATCTCTTTTTTCCCTCCCTGCTGTCTCTGACCTAATTGTCTCTCCATCTCCACCACCATCACCCCACCCTTCAACGCTTCATAATCCACCCACCATCTCTACTCCTTCCAAGGATCAGATTAATCGAGATCACCACCAGAGAAAGACGATGACGGCGGCAGCAAACATCGCCGGACAGTT...

XM_057937821.1
CGCCCTTTCTTCTTTTTCCAATTCCACCTTTTTTTATTTTATTTTATTTTCTCTTCCCTCCATTTCTCTCTCTCCTCCTCATCTCTTTTTTCCCTCCCTGCTGTCTCTGACCTAATTGTCTCTCCATCTCCACCACCATCACCCCACCCTTCAACGCTTCATAATCCACCCACCATCTCTACTCCTTCCACTAGAGGATCAGATTAATCGAGATCACCACCAGAGAAAGACGATGACGGCGGCAGCAAACATCGCCGGAC...

CDS

7 records

下载 CDS FASTA

LOC131010340
ATGACGGCGGCAGCAAACATCGCCGGACAGTTCGGAGACACCACGTACACCAAGGTGTTTGTTGGCGGGCTGGCGTGGGAGACGCAGAAGGATACCATGAAGAAGTACTTCGAGCAGTTCGGCGAAATATTGGAGGCCGTCGTCATCACCGACAAGACCACCGGAAGATCCAAGGGCTACGGATTTGTAACTTTCCGGGAACCAGATGCGGCAATGAGAGCATGTGTTGATGCAGCTCCAGTCATTGATGGGAGGAGGGC...

Protein

7 records

下载 Protein FASTA

XP_057793800.1
MTAAANIAGQFGDTTYTKVFVGGLAWETQKDTMKKYFEQFGEILEAVVITDKTTGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRNIRVMGGFHQGGFQGAATAGGVSAAAAAAAFASAATFPHYSIQQGIPYNLYGFSPYSAEYAYPTSYYGVYGGASAQYPLYGSGSSGLVSGAAAAAAAAAYYPYLNLSDGSGGATGYSGNQGYGVQYPHHLFQYSTMNSTGIYPPHYGTP...

XP_057793801.1
MTAAANIAGQFGDTTYTKVFVGGLAWETQKDTMKKYFEQFGEILEAVVITDKTTGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRNIRVMGGFHQGGFQGAATAGGVSAAAAAAAFASAATFPHYSIQQGIPYNLYGFSPYSAEYAYPTSYYGVYGGASAQYPLYGSGSSGLVSGAAAAAAAAAYYPYLNLSDGSGGATGYSGNQGYGVQYPHHLFQYSTMNSTGIYPPHYGTP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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