Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003356`

染色体: Chr02 坐标: 54724259-54726747 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003356`
名称	SmilChr02G003356
描述	probable beta-1,3-galactosyltransferase 8
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	54724259 - 54726747 / `+`

ID 对照

NCBI Gene ID	`LOC131010342`
GeneID	`131010342`
locus_tag	`-`
NCBI Name	`LOC131010342`
原始查询	`SmilChr02G003356`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable beta-1,3-galactosyltransferase 8
产物	probable beta-1%2C3-galactosyltransferase 8
Arabidopsis	`AT1G77810` (AT1G77810) Galactosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:844443] identity=62.4; qcov=1.04; evalue=0; confidence=high
Rice	`Os01g0877400` - identity=65.2; qcov=1.03; evalue=0; confidence=high
GO	GO:0000139 (Golgi membrane); GO:0006486 (GO:0006486); GO:0016758 (hexosyltransferase activity)
KEGG	-
Pfam	PF01762 (Galactosyl_T); PF13334 (DUF4094)
InterPro	-
eggNOG	-
NR	GeneID:131010342

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057793808.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057793808.1`
3	Nucleus	细胞核	0.00000	`XP_057793808.1`
4	Chromosome	染色体	0.00000	`XP_057793808.1`
5	Centromere	着丝粒	0.00000	`XP_057793808.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:54725177`	`C`	`T`	EMS_canonical_SNV	stop_gained	14	B1,B100,B104,B122,B19,B63,B70,B8,B83,C15,C70,C8,C83,D11
`Chr2:54725183`	`C`	`CA`	1bp_insertion	frameshift_variant	9	A11,A4,B14,B7,B84,B95,C14,C27,C74
`Chr2:54725224`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr2:54725308`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr2:54725371`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A5,B34,B59,C33
`Chr2:54725373`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A25,A5,B34,B59,C33
`Chr2:54725507`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B31,D10
`Chr2:54725579`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C53,C71
`Chr2:54725602`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A24,B108,B5
`Chr2:54725768`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr2:54725780`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr2:54725807`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793808.1

405 aa

202

405

DUF4094

Galactosyl_T

PF13334 DUF4094 49-120 aa PF01762 Galactosyl_T 148-345 aa

XP_057793809.1

384 aa

192

384

DUF4094

Galactosyl_T

PF13334 DUF4094 49-120 aa PF01762 Galactosyl_T 148-290 aa

XP_057793810.1

372 aa

186

372

DUF4094

Galactosyl_T

PF13334 DUF4094 16-87 aa PF01762 Galactosyl_T 115-312 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793808.1`	Pfam	`PF13334`	DUF4094	Family	49	120	1.6e-15	58.0	Domain of unknown function (DUF4094)
`XP_057793808.1`	Pfam	`PF01762`	Galactosyl_T	Family	148	345	1.9e-48	165.5	Galactosyltransferase
`XP_057793809.1`	Pfam	`PF13334`	DUF4094	Family	49	120	1.5e-15	58.1	Domain of unknown function (DUF4094)
`XP_057793809.1`	Pfam	`PF01762`	Galactosyl_T	Family	148	290	4.3e-36	125.2	Galactosyltransferase
`XP_057793810.1`	Pfam	`PF13334`	DUF4094	Family	16	87	1.7e-15	57.9	Domain of unknown function (DUF4094)
`XP_057793810.1`	Pfam	`PF01762`	Galactosyl_T	Family	115	312	1.7e-48	165.7	Galactosyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057937827.1
ATTTGTGGTTTCACCTTTGCTATTTCTTCCAAGTTAGAATACTGAAAAGAAATGAATATCTAGAATCAGCCTCTGTTGTGCTTAAATTAATACGACTCCAAAAATTCGGCCAAAGTGCTCCATTTTCTGCGAAAGAGAAGTAAAAAACCTTCCTCAGCCCCGGAAGTATGATTTATGTGTACAAGAAAAAGGGCCACACACTGTAATTTCAAGTAAACAGTTTGTTGAAACATGAGAAACTCATGATCAAACTGCCATCC...

XM_057937825.1
TTGTGGTAAGACCAAATCCATAGACATTTCGTATGGGAATTTAAATCTTGATCTCCTAGTACAGCAATTTGGAACCATTGAACCTGTAACCAAAATCATGAACATGGAATTATTATCTGGCTGTAGCAAATTAGCACACGTTTTTTCCTTTTCAGTAATTTGACTTGGAACTTGGTTCCCTCCTAGAAATGGAAATTCTAATAGTTGTTTCTTGCAGAATCATGAAATTCTTTACCCAACATAACACATCCTCAAACATG...

CDS

3 records

下载 CDS FASTA

LOC131010342
ATGAATTTGCATAAGCAGAAGCAAGCAATCATGTTGTTGATACAGGAAATCAGGAATCACAGCAAAAGGAGTGAGGCAGAGAAGAAGGTGGCCTGGCATATGCTGTCAATCAGCAAGAAAATGAGAGGAAAATCAGTTCCATTGAAGGTTATTGCTGCCCTATGTATAGCATGCTTTCTTGCAGGAACCCTGTTTACCACACGGACAAGGCCCCCGCCGCGGCTCCAACACGCGGACGAATGTGATCATAATAAGCGCAA...

Protein

3 records

下载 Protein FASTA

XP_057793808.1
MNLHKQKQAIMLLIQEIRNHSKRSEAEKKVAWHMLSISKKMRGKSVPLKVIAALCIACFLAGTLFTTRTRPPPRLQHADECDHNKRKLGEKIPSDSDIMGEVMKTREAIQSLDKSVSSLKKMKTASSSNGSSRAFVVIGINTAFSSKRRRESLRETWMLKGEQLEKVEREKGVVIRFVIGHSATRGGILDRAIDAEEAEYRDFLRLDHVEGYHQLSTKTRLFFSTAVATWDAHFYVKVDDDVHLNLGMLLTTLAKHTSKP...

XP_057793809.1
MNLHKQKQAIMLLIQEIRNHSKRSEAEKKVAWHMLSISKKMRGKSVPLKVIAALCIACFLAGTLFTTRTRPPPRLQHADECDHNKRKLGEKIPSDSDIMGEVMKTREAIQSLDKSVSSLKKMKTASSSNGSSRAFVVIGINTAFSSKRRRESLRETWMLKGEQLEKVEREKGVVIRFVIGHSATRGGILDRAIDAEEAEYRDFLRLDHVEGYHQLSTKTRLFFSTAVATWDAHFYVKVDDDVHLNLGMLLTTLAKHTSKP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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