Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003360`

染色体: Chr02 坐标: 54738151-54742587 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003360`
名称	SmilChr02G003360
描述	uncharacterized protein ycf45
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	54738151 - 54742587 / `+`

ID 对照

NCBI Gene ID	`LOC131010343`
GeneID	`131010343`
locus_tag	`-`
NCBI Name	`LOC131010343`
原始查询	`SmilChr02G003360`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840224]; symbol=AT1G33290; hit=AT1G33290; species=arabidopsis; confidence=high
产物	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840224]; symbol=AT1G33290; hit=AT1G33290; species=arabidopsis; confidence=high
Arabidopsis	`AT1G33290` (AT1G33290) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840224] identity=64.5; qcov=0.952; evalue=1.69e-174; confidence=high
Rice	`Os12g0209000` - identity=63.4; qcov=0.957; evalue=7.27e-172; confidence=high
GO	GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF00004 (AAA); PF19568 (Spore_III_AA)
InterPro	-
eggNOG	-
NR	GeneID:131010343

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057793811.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057793811.1`
3	Mitochondrion	线粒体	0.20000	`XP_057793812.1`
4	Nucleus	细胞核	0.00000	`XP_057793811.1`
5	Chromosome	染色体	0.00000	`XP_057793811.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:54738237`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B11,C55
`Chr2:54738254`	`C`	`T`	EMS_canonical_SNV	stop_gained	50	A15,A3,A9,B101,B108,B113,B12,B120,B128,B140,B16,B17,B18,B22,B26,B27,B29,B32,B38,B40,B47,B5,B50,B55,B6,B61,B70,B80,B86,B98,C18,C23,C25,C29,C37,C41,C47,C49,C50,C57,C63,C64,C66,C70,C82,C86,D11,D4,D7,D8
`Chr2:54738332`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B11,C55
`Chr2:54738522`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr2:54740716`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr2:54740758`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B74,B8
`Chr2:54740814`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B36,C5
`Chr2:54741742`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:54741761`	`T`	`TCC`	2bp_insertion	frameshift_variant	2	B6,B66
`Chr2:54741761`	`T`	`TCC`	2bp_insertion	CDS_variant	2	B6,B66
`Chr2:54741763`	`C`	`CAA`	2bp_insertion	frameshift_variant	2	B6,B66
`Chr2:54741763`	`C`	`CAA`	2bp_insertion	CDS_variant	2	B6,B66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793811.1

400 aa

200

400

Spore_III_AA

PF19568 Spore_III_AA 193-318 aa

XP_057793812.1

399 aa

200

399

Spore_III_AA

AAA

PF19568 Spore_III_AA 189-317 aa PF00004 AAA 191-277 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793811.1`	Pfam	`PF19568`	Spore_III_AA	Family	193	318	1.8e-13	51.1	Sporulation stage III, protein AA
`XP_057793812.1`	Pfam	`PF19568`	Spore_III_AA	Family	189	317	1.1e-13	51.8	Sporulation stage III, protein AA
`XP_057793812.1`	Pfam	`PF00004`	AAA	Domain	191	277	0.00021	22.5	ATPase family associated with various cellular activities (AAA)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057937829.1
GGGTTGGAGGGGAATATGATTGATGGCTGCTTGTTTCTTCACAACTCTATCTCTATTCTCTGCGACTCATCCACCACCACCTCCATCTCCATCTCCTTGTTGTCGACTAAGTTCACATCCACTCAACAAAAACACACTTTTCACTAGTACTATTGGATTTGCTCGATCACAATGTCGCAGTGTTGCGAGCACAAGGATTGACAGCCCTTCTACGGTTGGTGATGACGATATCCACGCACTGTTGCAGATTCTTCCACATG...

XM_057937828.1
ATGGCTGCTTGTTTCTTCACAACTCTATCTCTATTCTCTGCGACTCATCCACCACCACCTCCATCTCCATCTCCTTGTTGTCGACTAAGTTCACATCCACTCAACAAAAACACACTTTTCACTAGTACTATTGGATTTGCTCGATCACAATGTCGCAGTGTTGCGAGCACAAGGATTGACAGCCCTTCTACGGTTGGTGATGACGATATCCACGCACTGTTGCAGATTCTTCCACATGATTTGCGCCACAATCTTTTAGA...

CDS

2 records

下载 CDS FASTA

LOC131010343
ATGGCTGCTTGTTTCTTCACAACTCTATCTCTATTCTCTGCGACTCATCCACCACCACCTCCATCTCCATCTCCTTGTTGTCGACTAAGTTCACATCCACTCAACAAAAACACACTTTTCACTAGTACTATTGGATTTGCTCGATCACAATGTCGCAGTGTTGCGAGCACAAGGATTGACAGCCCTTCTACGGTTGGTGATGACGATATCCACGCACTGTTGCAGATTCTTCCACATGATTTGCGCCACAATCTTTTAGA...

Protein

2 records

下载 Protein FASTA

XP_057793811.1
MAACFFTTLSLFSATHPPPPPSPSPCCRLSSHPLNKNTLFTSTIGFARSQCRSVASTRIDSPSTVGDDDIHALLQILPHDLRHNLLDDSNRHHLLEVILDVGRPPQACYFGDLGRRCLRKREVSKEELEYAQNAIGELGGDNRAGIVGTLHRISAIRNKNGKVIGLTCRVGRPHRENMDMVKDLLEYGKSILFLGSRPGAGKTTVMRGISRVLSDEHLKRVVIVDTSNEIGGDGDIPHPAIGRARRLQVSEPCMQHKVMI...

XP_057793812.1
MAACFFTTLSLFSATHPPPPPSPSPCCRLSSHPLNKNTLFTSTIGFARSQCRSVASTRIDSPSTVGDDDIHALLQILPHDLRHNLLDDSNRHHLLEVILDVGRPPQACYFGDLGRRCLRKREVSKEELEYAQNAIGELGGDNRAGIVGTLHRISAIRNKNGKVIGLTCRVGRPHRENMDMVKDLLEYGKSILFLGRPGAGKTTVMRGISRVLSDEHLKRVVIVDTSNEIGGDGDIPHPAIGRARRLQVSEPCMQHKVMIE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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