Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003367`

染色体: Chr02 坐标: 54788150-54795754 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003367`
名称	SmilChr02G003367
描述	protein IQ-DOMAIN 32-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	54788150 - 54795754 / `-`

ID 对照

NCBI Gene ID	`LOC131010313`
GeneID	`131010313`
locus_tag	`-`
NCBI Name	`LOC131010313`
原始查询	`SmilChr02G003367`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein IQ-DOMAIN 32-like
产物	protein IQ-DOMAIN 32-like
Arabidopsis	`AT1G19870` (iqd32) IQ-domain 32 [Source:NCBI gene (formerly Entrezgene);Acc:838575] identity=35.4; qcov=1.05; evalue=7.46e-103; confidence=medium
Rice	`Os04g0663100` - identity=32.3; qcov=1.12; evalue=1.97e-82; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00612 (IQ); PF13178 (DUF4005)
InterPro	-
eggNOG	-
NR	GeneID:131010313

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	0.80000	`XP_057793755.1`
2	Nucleus membrane	核膜	0.60000	`XP_057793754.1`
3	Cell membrane	细胞膜	0.40000	`XP_057793755.1`
4	Cytoplasm	细胞质	0.20000	`XP_057793754.1`
5	Phragmoplast	Phragmoplast	0.20000	`XP_057793756.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:54789266`	`G`	`GA`	1bp_insertion	frameshift_variant	1	B98
`Chr2:54789266`	`G`	`GA`	1bp_insertion	CDS_variant	1	B98
`Chr2:54789296`	`TCA`	`T`	2bp_deletion	frameshift_variant	115	A1,A16,A18,A19,A2,A20,A21,A24,A25,A4,A7,B10,B100,B101,B102,B104,B108,B109,B110,B112,B113,B122,B127,B128,B129,B133,B136,B137,B138,B15,B2,B20,B25,B28,B30,B38,B39,B4,B41,B44,B45,B48,B49,B5,B53,B54,B56,B57,B6,B63,B64,B66,B68,B69,B7,B70,B71,B72,B73,B74,B77,B79,B8,B81,B82,B83,B89,B90,B91,B92,B93,B94,B99,C1,C12,C14,C15,C16,C19,C2,C21,C24,C25,C26,C3,C30,C32,C35,C36,C40,C41,C43,C44,C45,C51,C54,C58,C6,C60,C61,C62,C64,C66,C68,C70,C72,C79,C8,C86,C87,D11,D2,D3,D5,D9
`Chr2:54789321`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr2:54789429`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C29,C6
`Chr2:54789612`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B78,B94,C39
`Chr2:54789639`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr2:54789746`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B93,C2
`Chr2:54789865`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,C71
`Chr2:54789904`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,C83
`Chr2:54790020`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,B108,B5
`Chr2:54790126`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793754.1

868 aa

434

868

DUF4005

PF00612 IQ 201-217 aa PF00612 IQ 223-240 aa PF13178 DUF4005 712-828 aa

XP_057793755.1

846 aa

423

846

DUF4005

PF00612 IQ 201-217 aa PF00612 IQ 223-240 aa PF13178 DUF4005 717-828 aa

XP_057793756.1

843 aa

422

843

DUF4005

PF00612 IQ 201-217 aa PF00612 IQ 223-240 aa PF13178 DUF4005 715-828 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793754.1`	Pfam	`PF00612`	IQ	Motif	201	217	8.7e-09	35.1	IQ calmodulin-binding motif
`XP_057793754.1`	Pfam	`PF00612`	IQ	Motif	223	240	8.7e-09	35.1	IQ calmodulin-binding motif
`XP_057793754.1`	Pfam	`PF13178`	DUF4005	Family	712	828	5.5e-07	30.8	Protein of unknown function (DUF4005)
`XP_057793755.1`	Pfam	`PF00612`	IQ	Motif	201	217	7.8e-09	35.3	IQ calmodulin-binding motif
`XP_057793755.1`	Pfam	`PF00612`	IQ	Motif	223	240	7.8e-09	35.3	IQ calmodulin-binding motif
`XP_057793755.1`	Pfam	`PF13178`	DUF4005	Family	717	828	2.9e-07	31.7	Protein of unknown function (DUF4005)
`XP_057793756.1`	Pfam	`PF00612`	IQ	Motif	201	217	7.5e-09	35.3	IQ calmodulin-binding motif
`XP_057793756.1`	Pfam	`PF00612`	IQ	Motif	223	240	7.5e-09	35.3	IQ calmodulin-binding motif
`XP_057793756.1`	Pfam	`PF13178`	DUF4005	Family	715	828	3.6e-07	31.4	Protein of unknown function (DUF4005)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057937773.1
TTGAATGATACAATCGGAATCCAAAAGCAAAGTTAATTAGATCTAAGGGGGGATGTTGACGTCCGTGTTCCCCGATATTGCCCCTTTTATCTGCTTCAATTCCAACTAAAATATAATCTAAAATAAACATAGTAATTTCCAACAAAATACATTTCGAAATTTTACAAAAAATATTTGCTAATTTAGCATATGCTATGTTGCTCTAGACTGGTAGGCGGTAGCCTGTCACTCAGAAAAAACAAGAGCACACCATTTTTAGA...

XM_057937771.1
TTGAATGATACAATCGGAATCCAAAAGCAAAGTTAATTAGATCTAAGGGGGGATGTTGACGTCCGTGTTCCCCGATATTGCCCCTTTTATCTGCTTCAATTCCAACTAAAATATAATCTAAAATAAACATAGTAATTTCCAACAAAATACATTTCGAAATTTTACAAAAAATATTTGCTAATTTAGCATATGCTATGTTGCTCTAGACTGGTAGGCGGTAGCCTGTCACTCAGAAAAAACAAGAGCACACCATTTTTAGA...

CDS

3 records

下载 CDS FASTA

LOC131010313
ATGGGAAAATCAACTCCGGCATGTTTCAGGATCATCAGCTGCGGGGGCGATTCTGTCGAGCATGACGATCTCCAAACTCCCGAAAGCAAGGCCTCTAGTGATCGGCGTGGGTGGAGTTTCCGGAAGAGATCTGCTAGACATCGCGTACTGAGTAACAGCGTTACTTCAGAAGCACCTGCATCGGCCAGCAAGGATAGCCAAGAATCTATATCTGTCAACTGCCAAGTGCAGCCTGATCTGACTATTACGGAGAAGACCAC...

Protein

3 records

下载 Protein FASTA

XP_057793754.1
MGKSTPACFRIISCGGDSVEHDDLQTPESKASSDRRGWSFRKRSARHRVLSNSVTSEAPASASKDSQESISVNCQVQPDLTITEKTTEIQQKEEKTSVIQQKEEKTTEIQQKEEKTAEILQKEEKTTEILPKEEKPTEILPKEEKPAEILQKEEKTTEILQKEEETIELQQKEEKLELSSLLDSKLSIEDDTGADAPLDEHSIILIQTAVRGLLAQRVLLKQKSITKLQAVVRGHIVRSHAVGTLRCVQAIIKMQALVRA...

XP_057793755.1
MGKSTPACFRIISCGGDSVEHDDLQTPESKASSDRRGWSFRKRSARHRVLSNSVTSEAPASASKDSQESISVNCQVQPDLTITEKTTEIQQKEEKTSVIQQKEEKTTEIQQKEEKTAEILQKEEKTTEILPKEEKPTEILPKEEKPAEILQKEEKTTEILQKEEETIELQQKEEKLELSSLLDSKLSIEDDTGADAPLDEHSIILIQTAVRGLLAQRVLLKQKSITKLQAVVRGHIVRSHAVGTLRCVQAIIKMQALVRA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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