当前解析结果
SmilChr02G003368| 统一新 Gene ID | SmilChr02G003368 |
|---|---|
| 名称 | SmilChr02G003368 |
| 描述 | uncharacterized SmilChr02G003368 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 54804853 - 54810178 / - |
| NCBI Gene ID | LOC131010333 |
|---|---|
| GeneID | 131010333 |
| locus_tag | - |
| NCBI Name | LOC131010333 |
| 原始查询 | SmilChr02G003368 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Regulator of chromosome condensation (RCC1) family protein [Source:NCBI gene (formerly Entrezgene);Acc:838576]; symbol=AT1G19880; hit=AT1G19880; species=arabidopsis; confidence=high |
| 产物 | Regulator of chromosome condensation (RCC1) family protein [Source:NCBI gene (formerly Entrezgene);Acc:838576]; symbol=AT1G19880; hit=AT1G19880; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G19880 (AT1G19880)Regulator of chromosome condensation (RCC1) family protein [Source:NCBI gene (formerly Entrezgene);Acc:838576] identity=65.6; qcov=0.918; evalue=0; confidence=high |
| Rice | Os04g0662800- identity=64.4; qcov=0.889; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00415 (RCC1); PF13540 (RCC1_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010333 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793791.1 |
| 2 | Nucleoplasm | 核质 | 0.80000 | XP_057793792.1 |
| 3 | Chromosome | 染色体 | 0.40000 | XP_057793791.1 |
| 4 | Cytosol | 细胞质基质 | 0.40000 | XP_057793792.1 |
| 5 | Nucleolar fibrillar center | Nucleolar fibrillar center | 0.20000 | XP_057793792.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:54805072 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr2:54805888 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr2:54805916 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr2:54806520 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,C39,C65 |
Chr2:54809133 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B124,B47 |
Chr2:54809360 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B104,B124,B47 |
Chr2:54809360 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B124,B47 |
Chr2:54809626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B76,C71,C72 |
Chr2:54809637 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr2:54809638 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B89,C1,C85 |
Chr2:54809658 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B19 |
Chr2:54809688 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793791.1PF13540
RCC1_2 62-86 aa
PF00415
RCC1 73-122 aa
PF13540
RCC1_2 113-138 aa
PF00415
RCC1 125-171 aa
PF00415
RCC1 185-241 aa
PF13540
RCC1_2 228-256 aa
PF00415
RCC1 244-280 aa
PF00415
RCC1 349-396 aa
XP_057793792.1PF00415
RCC1 58-97 aa
PF13540
RCC1_2 88-113 aa
PF00415
RCC1 100-146 aa
PF00415
RCC1 160-216 aa
PF13540
RCC1_2 203-231 aa
PF00415
RCC1 219-255 aa
PF00415
RCC1 324-371 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793791.1 |
Pfam | PF13540 |
RCC1_2 | Repeat | 62 | 86 | 1.7e-25 | 88.8 | Regulator of chromosome condensation (RCC1) repeat |
XP_057793791.1 |
Pfam | PF00415 |
RCC1 | Repeat | 73 | 122 | 1e-56 | 190.0 | Regulator of chromosome condensation (RCC1) repeat |
XP_057793791.1 |
Pfam | PF13540 |
RCC1_2 | Repeat | 113 | 138 | 1.7e-25 | 88.8 | Regulator of chromosome condensation (RCC1) repeat |
XP_057793791.1 |
Pfam | PF00415 |
RCC1 | Repeat | 125 | 171 | 1e-56 | 190.0 | Regulator of chromosome condensation (RCC1) repeat |
XP_057793791.1 |
Pfam | PF00415 |
RCC1 | Repeat | 185 | 241 | 1e-56 | 190.0 | Regulator of chromosome condensation (RCC1) repeat |
XP_057793791.1 |
Pfam | PF13540 |
RCC1_2 | Repeat | 228 | 256 | 1.7e-25 | 88.8 | Regulator of chromosome condensation (RCC1) repeat |
XP_057793791.1 |
Pfam | PF00415 |
RCC1 | Repeat | 244 | 280 | 1e-56 | 190.0 | Regulator of chromosome condensation (RCC1) repeat |
XP_057793791.1 |
Pfam | PF00415 |
RCC1 | Repeat | 349 | 396 | 1e-56 | 190.0 | Regulator of chromosome condensation (RCC1) repeat |
XP_057793792.1 |
Pfam | PF00415 |
RCC1 | Repeat | 58 | 97 | 1.5e-47 | 160.7 | Regulator of chromosome condensation (RCC1) repeat |
XP_057793792.1 |
Pfam | PF13540 |
RCC1_2 | Repeat | 88 | 113 | 1.3e-19 | 70.1 | Regulator of chromosome condensation (RCC1) repeat |
XP_057793792.1 |
Pfam | PF00415 |
RCC1 | Repeat | 100 | 146 | 1.5e-47 | 160.7 | Regulator of chromosome condensation (RCC1) repeat |
XP_057793792.1 |
Pfam | PF00415 |
RCC1 | Repeat | 160 | 216 | 1.5e-47 | 160.7 | Regulator of chromosome condensation (RCC1) repeat |
XP_057793792.1 |
Pfam | PF13540 |
RCC1_2 | Repeat | 203 | 231 | 1.3e-19 | 70.1 | Regulator of chromosome condensation (RCC1) repeat |
XP_057793792.1 |
Pfam | PF00415 |
RCC1 | Repeat | 219 | 255 | 1.5e-47 | 160.7 | Regulator of chromosome condensation (RCC1) repeat |
XP_057793792.1 |
Pfam | PF00415 |
RCC1 | Repeat | 324 | 371 | 1.5e-47 | 160.7 | Regulator of chromosome condensation (RCC1) repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。